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name: rworkflows | ||
'on': | ||
push: | ||
branches: | ||
- master | ||
- main | ||
- devel | ||
- RELEASE_** | ||
pull_request: | ||
branches: | ||
- master | ||
- main | ||
- devel | ||
- RELEASE_** | ||
jobs: | ||
rworkflows: | ||
permissions: write-all | ||
runs-on: ${{ matrix.config.os }} | ||
name: ${{ matrix.config.os }} (${{ matrix.config.r }}) | ||
container: ${{ matrix.config.cont }} | ||
strategy: | ||
fail-fast: ${{ false }} | ||
matrix: | ||
config: | ||
- os: ubuntu-latest | ||
bioc: devel | ||
r: auto | ||
cont: ghcr.io/bioconductor/bioconductor_docker:devel | ||
rspm: ~ | ||
- os: macOS-latest | ||
bioc: release | ||
r: auto | ||
cont: ~ | ||
rspm: ~ | ||
- os: windows-latest | ||
bioc: release | ||
r: auto | ||
cont: ~ | ||
rspm: ~ | ||
steps: | ||
- uses: neurogenomics/rworkflows@master | ||
with: | ||
run_bioccheck: ${{ false }} | ||
run_rcmdcheck: ${{ true }} | ||
as_cran: ${{ true }} | ||
run_vignettes: ${{ true }} | ||
has_testthat: ${{ true }} | ||
run_covr: ${{ true }} | ||
run_pkgdown: ${{ true }} | ||
has_runit: ${{ false }} | ||
has_latex: ${{ false }} | ||
GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} | ||
run_docker: ${{ false }} | ||
DOCKER_TOKEN: ${{ secrets.DOCKER_TOKEN }} | ||
runner_os: ${{ runner.os }} | ||
cache_version: cache-v1 | ||
docker_registry: ghcr.io |
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|
@@ -3,3 +3,4 @@ inst/doc | |
vignettes/*.html | ||
vignettes/*.R | ||
docs | ||
README.html |
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Package: ggsc | ||
Title: Visualizing Single Cell Data | ||
Version: 1.1.1.002 | ||
Version: 1.1.1.003 | ||
Authors@R: c( | ||
person("Guangchuang", "Yu", | ||
email = "[email protected]", | ||
|
@@ -60,7 +60,7 @@ Suggests: | |
STexampleData, | ||
testthat (>= 3.0.0) | ||
BugReports: https://github.com/YuLab-SMU/ggsc/issues | ||
URL: https://github.com/YuLab-SMU/ggsc | ||
URL: https://github.com/YuLab-SMU/ggsc (devel), https://yulab-smu.top/ggsc/ (docs) | ||
biocViews: DimensionReduction, GeneExpression, SingleCell, | ||
Software, Spatial, Transcriptomics,Visualization | ||
VignetteBuilder: knitr | ||
|
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--- | ||
title: "`r read.dcf('DESCRIPTION', fields = 'Package')[1]`" | ||
date: "<h4>README updated: <i>`r format( Sys.Date())`</i></h4>" | ||
output: | ||
github_document | ||
html_preview: false | ||
--- | ||
|
||
|
||
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<!-- generated by rworkflows::use_readme() --> | ||
|
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[![License: Artistic-2.0](https://img.shields.io/badge/license-Artistic--2.0-blue.svg)](https://cran.r-project.org/web/licenses/Artistic-2.0) | ||
[![](https://img.shields.io/badge/devel%20version-1.1.1.002-black.svg)](https://github.com/YuLab-SMU/ggsc) | ||
[![](https://img.shields.io/github/languages/code-size/YuLab-SMU/ggsc.svg)](https://github.com/YuLab-SMU/ggsc) | ||
[![](https://img.shields.io/github/last-commit/YuLab-SMU/ggsc.svg)](https://github.com/YuLab-SMU/ggsc/commits/master) | ||
<br> | ||
[![R build status](https://github.com/YuLab-SMU/ggsc/workflows/rworkflows/badge.svg)](https://github.com/YuLab-SMU/ggsc/actions) | ||
[![](https://codecov.io/gh/YuLab-SMU/ggsc/branch/master/graph/badge.svg)](https://app.codecov.io/gh/YuLab-SMU/ggsc) | ||
<br> | ||
<a href="https://app.codecov.io/gh/YuLab-SMU/ggsc/tree/master" target='_blank'><img src="https://codecov.io/gh/YuLab-SMU/ggsc/branch/master/graphs/icicle.svg" title="Codecov icicle graph" width="200" height="50" style="vertical-align: top;"></a> | ||
|
||
|
||
<!-- To modify Package/Title/Description/Authors fields, edit the DESCRIPTION file --> | ||
|
||
```{r, echo=FALSE, include=FALSE} | ||
pkg <- read.dcf("DESCRIPTION", fields = "Package")[1] | ||
title <- read.dcf("DESCRIPTION", fields = "Title")[1] | ||
description <- read.dcf("DESCRIPTION", fields = "Description")[1] | ||
description <- gsub("\n", " ", description) | ||
URL <- read.dcf('DESCRIPTION', fields = 'URL')[1] | ||
owner <- tolower(strsplit(URL,"/")[[1]][4]) | ||
``` | ||
|
||
|
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## ``r pkg``: `r title` | ||
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### `r description` | ||
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## :writing_hand: Authors | ||
|
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Guangchuang YU | ||
|
||
School of Basic Medical Sciences, Southern Medical University | ||
|
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<https://yulab-smu.top> | ||
|
||
|
||
<!-- | ||
If you use ``r pkg``, please cite: --> | ||
|
||
<!-- Modify this by editing the file: inst/CITATION --> | ||
|
||
<!-- | ||
> `r utils::citation(pkg)$textVersion` | ||
--> | ||
|
||
|
||
## :arrow_double_down: Installation | ||
|
||
```R | ||
if(!require("remotes")) install.packages("remotes") | ||
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remotes::install_github("`r URL`") | ||
library(`r pkg`) | ||
``` | ||
## Documentation | ||
|
||
### [Website](https://yulab-smu.top/ggsc) | ||
|
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|
||
<br> |
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ggsc | ||
================ | ||
<h4> | ||
README updated: <i>2023-11-29</i> | ||
</h4> | ||
|
||
<!-- generated by rworkflows::use_readme() --> | ||
|
||
[![License: | ||
Artistic-2.0](https://img.shields.io/badge/license-Artistic--2.0-blue.svg)](https://cran.r-project.org/web/licenses/Artistic-2.0) | ||
[![](https://img.shields.io/badge/devel%20version-1.1.1.002-black.svg)](https://github.com/YuLab-SMU/ggsc) | ||
[![](https://img.shields.io/github/languages/code-size/YuLab-SMU/ggsc.svg)](https://github.com/YuLab-SMU/ggsc) | ||
[![](https://img.shields.io/github/last-commit/YuLab-SMU/ggsc.svg)](https://github.com/YuLab-SMU/ggsc/commits/master) | ||
<br> [![R build | ||
status](https://github.com/YuLab-SMU/ggsc/workflows/rworkflows/badge.svg)](https://github.com/YuLab-SMU/ggsc/actions) | ||
[![](https://codecov.io/gh/YuLab-SMU/ggsc/branch/master/graph/badge.svg)](https://app.codecov.io/gh/YuLab-SMU/ggsc) | ||
<br> | ||
<a href="https://app.codecov.io/gh/YuLab-SMU/ggsc/tree/master" target='_blank'><img src="https://codecov.io/gh/YuLab-SMU/ggsc/branch/master/graphs/icicle.svg" title="Codecov icicle graph" width="200" height="50" style="vertical-align: top;"></a> | ||
|
||
<!-- To modify Package/Title/Description/Authors fields, edit the DESCRIPTION file --> | ||
|
||
## `ggsc`: Visualizing Single Cell Data | ||
|
||
### Useful functions to visualize single cell and spatial data. It supports both ‘SingleCellExperiment’ and ‘Seurat’ objects. It also supports visualizing the data using grammar of graphics implemented in ‘ggplot2’. | ||
|
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## :writing_hand: Authors | ||
|
||
Guangchuang YU | ||
|
||
School of Basic Medical Sciences, Southern Medical University | ||
|
||
<https://yulab-smu.top> | ||
|
||
<!-- | ||
If you use `ggsc`, please cite: --> | ||
<!-- Modify this by editing the file: inst/CITATION --> | ||
<!-- | ||
> | ||
--> | ||
|
||
## :arrow_double_down: Installation | ||
|
||
``` r | ||
if(!require("remotes")) install.packages("remotes") | ||
|
||
remotes::install_github("https://github.com/YuLab-SMU/ggsc (devel), https://yulab-smu.top/ggsc/ (docs)") | ||
library(ggsc) | ||
``` | ||
|
||
## Documentation | ||
|
||
### [Website](https://yulab-smu.top/ggsc) | ||
|
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<br> |
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