Merge pull request #30 from VirtualFlyBrain/release_2024-09-19

Release 2024-09-19
VirtualFlyBrain · Sep 19, 2024 · 2677be6 · 2677be6
2 parents 2dfbf8d + 5dd0fb0
commit 2677be6
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Showing 7 changed files with 20 additions and 16 deletions.
diff --git a/.github/workflows/qc.yml b/.github/workflows/qc.yml
@@ -19,7 +19,7 @@ jobs:
   ontology_qc:
     # The type of runner that the job will run on
     runs-on: ubuntu-latest
-    container: obolibrary/odkfull:v1.5.1
+    container: obolibrary/odkfull:v1.5.2
 
     # Steps represent a sequence of tasks that will be executed as part of the job
     steps:

diff --git a/VFB_drivers-base.owl b/VFB_drivers-base.owl
@@ -11,14 +11,14 @@
      xmlns:terms="http://purl.org/dc/terms/"
      xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#">
     <owl:Ontology rdf:about="http://purl.obolibrary.org/obo/VFB_drivers/VFB_drivers-base.owl">
-        <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/VFB_drivers/releases/2024-09-16/VFB_drivers-base.owl"/>
+        <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/VFB_drivers/releases/2024-09-19/VFB_drivers-base.owl"/>
         <dc:description>An ontology of Drosophila melanogaster drivers and expression patterns. All genetic objects are created using data taken directly from FlyBase.</dc:description>
         <dc:title>VFB Driver Ontology</dc:title>
         <dc:type rdf:resource="http://purl.obolibrary.org/obo/IAO_8000001"/>
         <terms:contributor>http://orcid.org/0000-0002-1373-1705</terms:contributor>
         <terms:license>https://creativecommons.org/licenses/by/4.0/</terms:license>
-        <oboInOwl:date>16:09:2024 01:38</oboInOwl:date>
-        <owl:versionInfo>2024-09-16</owl:versionInfo>
+        <oboInOwl:date>19:09:2024 09:47</oboInOwl:date>
+        <owl:versionInfo>2024-09-19</owl:versionInfo>
     </owl:Ontology>
 
 

diff --git a/VFB_drivers-cedar.owl b/VFB_drivers-cedar.owl
@@ -11,14 +11,14 @@
      xmlns:terms="http://purl.org/dc/terms/"
      xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#">
     <owl:Ontology rdf:about="http://purl.obolibrary.org/obo/VFB_drivers/VFB_drivers-cedar.owl">
-        <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/VFB_drivers/releases/2024-09-16/VFB_drivers-cedar.owl"/>
+        <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/VFB_drivers/releases/2024-09-19/VFB_drivers-cedar.owl"/>
         <dc:description>An ontology of Drosophila melanogaster drivers and expression patterns. All genetic objects are created using data taken directly from FlyBase.</dc:description>
         <dc:title>VFB Driver Ontology</dc:title>
         <terms:contributor>http://orcid.org/0000-0002-1373-1705</terms:contributor>
         <terms:license>https://creativecommons.org/licenses/by/4.0/</terms:license>
-        <oboInOwl:date>16:09:2024 01:37</oboInOwl:date>
+        <oboInOwl:date>19:09:2024 09:47</oboInOwl:date>
         <rdfs:comment>This release artefact does not contain the &apos;has hemidriver&apos; relationships and may not be suitable for most users.</rdfs:comment>
-        <owl:versionInfo>2024-09-16</owl:versionInfo>
+        <owl:versionInfo>2024-09-19</owl:versionInfo>
     </owl:Ontology>
 
 
@@ -126,6 +126,7 @@
     <!-- http://purl.obolibrary.org/obo/fbbt/vfb/VFBext_0000008 -->
 
     <owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/fbbt/vfb/VFBext_0000008">
+        <rdfs:domain rdf:resource="http://purl.obolibrary.org/obo/fbbt/vfb/VFBext_0000010"/>
         <obo:IAO_0000115>A relationship between an interesctional expression pattern and one of the hemidrivers that contributes to driving its expression.  For example, the split-GAL4 system drives expression using transgenes encoding a pair of interacting proteins, one with a GAL4 DNA binding domain and one with an transcription activation domain.  In cells that co-express these two transgenes, interaction between the two proteins reconsitutes a transcription factor, driving expression from transgenes under the control o f UAS enhancer/promoter elements.</obo:IAO_0000115>
         <rdfs:label xml:lang="en">has hemidriver</rdfs:label>
     </owl:ObjectProperty>

diff --git a/VFB_drivers-full.owl b/VFB_drivers-full.owl
@@ -11,13 +11,13 @@
      xmlns:terms="http://purl.org/dc/terms/"
      xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#">
     <owl:Ontology rdf:about="http://purl.obolibrary.org/obo/VFB_drivers/VFB_drivers-full.owl">
-        <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/VFB_drivers/releases/2024-09-16/VFB_drivers-full.owl"/>
+        <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/VFB_drivers/releases/2024-09-19/VFB_drivers-full.owl"/>
         <dc:description>An ontology of Drosophila melanogaster drivers and expression patterns. All genetic objects are created using data taken directly from FlyBase.</dc:description>
         <dc:title>VFB Driver Ontology</dc:title>
         <terms:contributor>http://orcid.org/0000-0002-1373-1705</terms:contributor>
         <terms:license>https://creativecommons.org/licenses/by/4.0/</terms:license>
-        <oboInOwl:date>16:09:2024 01:37</oboInOwl:date>
-        <owl:versionInfo>2024-09-16</owl:versionInfo>
+        <oboInOwl:date>19:09:2024 09:47</oboInOwl:date>
+        <owl:versionInfo>2024-09-19</owl:versionInfo>
     </owl:Ontology>
 
 
@@ -125,6 +125,7 @@
     <!-- http://purl.obolibrary.org/obo/fbbt/vfb/VFBext_0000008 -->
 
     <owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/fbbt/vfb/VFBext_0000008">
+        <rdfs:domain rdf:resource="http://purl.obolibrary.org/obo/fbbt/vfb/VFBext_0000010"/>
         <obo:IAO_0000115>A relationship between an interesctional expression pattern and one of the hemidrivers that contributes to driving its expression.  For example, the split-GAL4 system drives expression using transgenes encoding a pair of interacting proteins, one with a GAL4 DNA binding domain and one with an transcription activation domain.  In cells that co-express these two transgenes, interaction between the two proteins reconsitutes a transcription factor, driving expression from transgenes under the control o f UAS enhancer/promoter elements.</obo:IAO_0000115>
         <rdfs:label xml:lang="en">has hemidriver</rdfs:label>
     </owl:ObjectProperty>

diff --git a/VFB_drivers.owl b/VFB_drivers.owl
@@ -15,8 +15,8 @@
         <dc:title>VFB Driver Ontology</dc:title>
         <terms:contributor>http://orcid.org/0000-0002-1373-1705</terms:contributor>
         <terms:license>https://creativecommons.org/licenses/by/4.0/</terms:license>
-        <oboInOwl:date>16:09:2024 01:37</oboInOwl:date>
-        <owl:versionInfo>2024-09-16</owl:versionInfo>
+        <oboInOwl:date>19:09:2024 09:47</oboInOwl:date>
+        <owl:versionInfo>2024-09-19</owl:versionInfo>
     </owl:Ontology>
 
 
@@ -124,6 +124,7 @@
     <!-- http://purl.obolibrary.org/obo/fbbt/vfb/VFBext_0000008 -->
 
     <owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/fbbt/vfb/VFBext_0000008">
+        <rdfs:domain rdf:resource="http://purl.obolibrary.org/obo/fbbt/vfb/VFBext_0000010"/>
         <obo:IAO_0000115>A relationship between an interesctional expression pattern and one of the hemidrivers that contributes to driving its expression.  For example, the split-GAL4 system drives expression using transgenes encoding a pair of interacting proteins, one with a GAL4 DNA binding domain and one with an transcription activation domain.  In cells that co-express these two transgenes, interaction between the two proteins reconsitutes a transcription factor, driving expression from transgenes under the control o f UAS enhancer/promoter elements.</obo:IAO_0000115>
         <rdfs:label xml:lang="en">has hemidriver</rdfs:label>
     </owl:ObjectProperty>

diff --git a/src/ontology/Makefile b/src/ontology/Makefile
@@ -1,7 +1,7 @@
 # ----------------------------------------
 # Makefile for VFB_drivers
 # Generated using ontology-development-kit
-# ODK Version: v1.5.1
+# ODK Version: v1.5.2
 # ----------------------------------------
 # IMPORTANT: DO NOT EDIT THIS FILE. To override default make goals, use VFB_drivers.Makefile instead
 
@@ -47,7 +47,7 @@ REPORT_PROFILE_OPTS =       --profile $(ROBOT_PROFILE)
 OBO_FORMAT_OPTIONS =        
 SPARQL_VALIDATION_CHECKS =  owldef-self-reference iri-range label-with-iri multiple-replaced_by 
 SPARQL_EXPORTS =            basic-report class-count-by-prefix edges xrefs obsoletes synonyms 
-ODK_VERSION_MAKEFILE =      v1.5.1
+ODK_VERSION_MAKEFILE =      v1.5.2
 
 TODAY ?=                    $(shell date +%Y-%m-%d)
 OBODATE ?=                  $(shell date +'%d:%m:%Y %H:%M')

diff --git a/src/ontology/imports/merged_import.owl b/src/ontology/imports/merged_import.owl
@@ -7,8 +7,8 @@ Prefix(rdfs:=<http://www.w3.org/2000/01/rdf-schema#>)
 
 
 Ontology(<http://purl.obolibrary.org/obo/VFB_drivers/imports/merged_import.owl>
-<http://purl.obolibrary.org/obo/VFB_drivers/releases/2024-09-16/imports/merged_import.owl>
-Annotation(owl:versionInfo "2024-09-16")
+<http://purl.obolibrary.org/obo/VFB_drivers/releases/2024-09-19/imports/merged_import.owl>
+Annotation(owl:versionInfo "2024-09-19")
 
 Declaration(Class(<http://purl.obolibrary.org/obo/FBbt_10000000>))
 Declaration(Class(<http://purl.obolibrary.org/obo/FBcv_0000000>))
@@ -42,6 +42,7 @@ Declaration(AnnotationProperty(<http://www.geneontology.org/formats/oboInOwl#sav
 
 AnnotationAssertion(Annotation(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> "PMID:17088209") <http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/fbbt/vfb/VFBext_0000008> "A relationship between an interesctional expression pattern and one of the hemidrivers that contributes to driving its expression.  For example, the split-GAL4 system drives expression using transgenes encoding a pair of interacting proteins, one with a GAL4 DNA binding domain and one with an transcription activation domain.  In cells that co-express these two transgenes, interaction between the two proteins reconsitutes a transcription factor, driving expression from transgenes under the control o f UAS enhancer/promoter elements.")
 AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/fbbt/vfb/VFBext_0000008> "has hemidriver"@en)
+ObjectPropertyDomain(<http://purl.obolibrary.org/obo/fbbt/vfb/VFBext_0000008> <http://purl.obolibrary.org/obo/fbbt/vfb/VFBext_0000010>)