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cluster_term_info

David Osumi-Sutherland edited this page Apr 21, 2017 · 2 revisions

Current page is a bit rubbish. We need to drop the listing of members as names - switching this to queries.

Layout:

  • Name: cluster 3.14 (VFB_nnnnnnn)

  • Thumbnail: (Ideally a 3D movie, but can live with at thumbnail) + linkout to LMB (using standard linkout schema). TBA to KB

  • Most typical neuron (exemplar):

    • Name: {exemplar name}
    • Types: {exemplar types}
    • relationships: {exemplar relation}
  • All types in cluster: { A uniqd list of types, excluding neuron }

Description: "A Cluster of morphologically similar neurons using affinity propagation clustering based on NBLAST neuron similarity scores (Costa et el., 2016)." [FBrf...]

Clustering version: TBA to KB

Sources: Clustering: CostaJefferis Member sources: Dynamically generated. Name, linkout, pub

MATCH (c:Cluster)<-[:Related {  label: 'member_of'}]-(i:Individual)-[:has_source]-(ds:data_source)
...

Licenses: "Refer to individual sources for license details."

** Queries:** Members of cluster (already in neo) Most Similar neurons (Dependent on pulling info in from R frames or NBlast Server).