Merge branch 'main' into lint-pr

.github/workflows/check-spelling.yaml

@@ -0,0 +1,23 @@
+---
+name: Spellcheck
+
+on:
+  push:
+    branches:
+      - main
+  pull_request:
+    branches:
+      - main
+
+jobs:
+  check:
+    runs-on: ubuntu-latest
+    name: Spellcheck
+    container:
+      image: rocker/tidyverse:4.1.2
+    steps:
+      - name: Checkout repo
+        uses: actions/checkout@v3
+
+      - name: Run Spelling Check test
+        uses: insightsengineering/[email protected]

inst/WORDLIST

@@ -1,3 +1,4 @@
+95th
 AKU
 Aga
 Ang
@@ -127,6 +128,7 @@ serosurveys
 smp
 smpl
 subfigures
+th
 tibble
 titers
 tsutsugamushi

vignettes/articles/enteric_fever_example.Rmd

@@ -190,9 +190,9 @@ In this plot, a steeper slope indicates a higher incidence. We can see that the
 Next, we must set conditions based on some assumptions about the data and errors that may need to be accounted for. This will differ based on background knowledge of the data. 
 
 
-The biological noise, $\nu$ ("nu"), represents error from cross-reactivity to other antibodies. It is defined as the 95th percentile of the distribution of antibody responses to the antigen-isotype in a populaiton with no exposure. 
+The biological noise, $\nu$ ("nu"), represents error from cross-reactivity to other antibodies. It is defined as the 95th percentile of the distribution of antibody responses to the antigen-isotype in a population with no exposure. 
 
-Measurement noise, $\varepsilon$ ("epsilon"), represents measurement error from the laboratory testing process. It is defined by a CV (coeficient of variation) as the ratio of the standard deviation to the mean for replicates. Note that the CV should ideally me measured accross plates rather than within the same plate. 
+Measurement noise, $\varepsilon$ ("epsilon"), represents measurement error from the laboratory testing process. It is defined by a CV (coefficient of variation) as the ratio of the standard deviation to the mean for replicates. Note that the CV should ideally be measured across plates rather than within the same plate. 
 
 *Formatting Specifications*: Noise parameter data should be a dataframe with one row for each antigen isotype and columns for each noise parameter below.