Merge pull request #302 from UCD-SERG/fix-methodology

polish methodology article

DESCRIPTION

@@ -1,7 +1,7 @@
 Type: Package
 Package: serocalculator
 Title: Estimating Infection Rates from Serological Data
-Version: 1.2.0.9013
+Version: 1.2.0.9014
 Authors@R: c(
     person("Peter", "Teunis", , "[email protected]", role = c("aut", "cph"),
            comment = "Author of the method and original code."),
@@ -69,4 +69,3 @@ Remotes:
     moodymudskipper/devtag
 Roxygen: list(markdown = TRUE, roclets = c("collate", "rd", "namespace", "devtag::dev_roclet"))
 RoxygenNote: 7.3.2
-

NEWS.md

@@ -8,7 +8,7 @@
 
 * Updated enteric fever example article with upgraded code and visualizations (#290)
 
-* Added `Methodology` vignette (#284)
+* Added `Methodology` vignette (#284, #302)
 
 * Added template for reporting Issues 
 (from `usethis::use_tidy_issue_template()`) (#270)

vignettes/methodology.qmd

@@ -33,7 +33,8 @@ at that time:
 
 $$\frac{d}{dt} \mathbb{E}\left[\frac{C(t)}{n} \mid N(t) =n\right]$$
 
-where $C(t)$ is the cumulative total number of infections in the population of interest,
+where $C(t)$ is the cumulative total number of infections in 
+the population of interest,
 and $N(t)$ is the number of individuals at risk at time $t$.
 
 ## Scale of incidence rates {visibility="hidden"}
@@ -346,6 +347,7 @@ The derivative of this expression doesn't come out cleanly, so we will use a *nu
 
 <!-- {{< include articles/_methods-continued.qmd >}} -->
 
-## References {.smaller}
-
+## References {.smaller .unnumbered}
 
+::: {#refs}
+:::