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Correct energetics, SBML L3V1 FBCv2
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Changed equations of complex III, IV and V of oxidative phosphorylation to correct the transport of protons over the mitochondrial membrane (reactions 226, 438, 439). This was incorrectly represented in the template model.

Made asparate transport over the mitochondrial membrane irreversible (reaction 1117), otherwise this would transport protons for 'free' over the mitochondrial membrane. This was already identified in the Yeast consensus network.

Updated SBML to L3V1 with FBCv2, also using updated RAVEN functions. This changed the compartment IDs slightly (removed C_). Amended README.md to reflect the changes.
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edkerk committed Oct 24, 2017
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