Significant update to version 4.1.0 by new reconstruction

* Model is completely reconstructed from scratch, using Yeast 7.6 as template.
* Standardized reaction IDs are introduced, referencing where the reaction came from (y0 is derived from yeast concensus network, y1 is modified from yeast concensus network, y2 is from other Yarrowia lipolytica reconstructions, y3 is manual curation).
* Gap-filling during model reconstruction was automated via MENECO. Some reactions from the previous model that were identified through gap-filling are omitted in this version.

README.md

@@ -2,7 +2,7 @@
 
 - Brief Model Description
 
-This repository contains the current genome-scale metabolic model of _Yarrowia lipolytica_ W29, named **iYali4**.
+This repository contains the current genome-scale metabolic model of _Yarrowia lipolytica_ W29, named **iYali4**. Various different updated versions can be downloaded as [releases](https://github.com/SysBioChalmers/Yarrowia_lipolytica_W29-GEM/releases).
 
 - Abstract:
 
@@ -17,13 +17,13 @@ _Yarrowia lipolytica_ is a promising microbial cell factory for the production o
 
 - Pubmed ID: 28725468
 
-- Last update: 2016-11-01
+- Last update: 2017-10-24
 
 - The model:
 
 |Taxonomy | Template Model | Reactions | Metabolites| Genes |
 | ------------- |:-------------:|:-------------:|:-------------:|-----:|
-|Yarrowia lipolytica W29 |	YeastMetabolicNetwork 7.6| 1985|	1683|	901|
+|Yarrowia lipolytica W29 |	YeastMetabolicNetwork 7.6| 1942|	1691|	847|
 
 
 This repository is administered by [@edkerk](https://github.com/edkerk/), Division of Systems and Synthetic Biology, Department of Biology and Biological Engineering, Chalmers University of Technology