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feat: enable I/O of SBO terms from SBML file #235

Merged
merged 7 commits into from
Sep 19, 2019
Merged

feat: enable I/O of SBO terms from SBML file #235

merged 7 commits into from
Sep 19, 2019

Commits on Aug 15, 2019

  1. feat: exportModel enable parsing of SBO terms from miriam fields

    @JonathanRob
    JonathanRob committed Aug 15, 2019
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Commits on Aug 16, 2019

  1. fix: importModel geneMiriams now read if genes stored as fbc_geneProduct

    @JonathanRob
    JonathanRob committed Aug 16, 2019
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  2. fix: exportModel update default gene SBO term

    @JonathanRob
    JonathanRob committed Aug 16, 2019
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  3. feat: exportModel avoid duplicate SBO term info in annotation fields 

    SBO terms are now written only to the ".sboTerm" SBML fields, rather than both those and the ".annotation" fields.
    @JonathanRob
    JonathanRob committed Aug 16, 2019
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  4. feat: importModel now reads SBO terms from SBML .sboTerm fields 

    Rather than reading SBO terms from the .annotation fields. This should be compatible with COBRA-exported SBML files as well.
    @JonathanRob
    JonathanRob committed Aug 16, 2019
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Commits on Aug 17, 2019

  1. feat: ravenCobraWrapper now handles gene SBO terms

    @JonathanRob
    JonathanRob committed Aug 17, 2019
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  2. feat: add subheadings to function description

    @haowang-bioinfo
    haowang-bioinfo committed Aug 17, 2019
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