Merge branch 'develop' into fix/pmids

.github/pull_request_template.md

@@ -4,6 +4,7 @@
 **I hereby confirm that I have:**
 
 - [ ] Tested my code on my own computer for running the model
+- [ ] Passed `testYamlConversion` check
 - [ ] Selected `develop` as a target branch
 
 *Note: replace [ ] with [X] to check the box. PLEASE DELETE THIS LINE*

model/Human-GEM.yml

@@ -143820,8 +143820,8 @@
           - m02552c: 1
           - m02553c: -1
           - m02961c: -1
-      - lower_bound: -1000
-      - upper_bound: 1000
+      - lower_bound: 0
+      - upper_bound: 0
       - gene_reaction_rule: ""
       - rxnFrom: "HMRdatabase"
       - eccodes: "1.8.1.3"
@@ -143905,7 +143905,7 @@
           - m02630c: -1
           - m02961c: 2
       - lower_bound: 0
-      - upper_bound: 1000
+      - upper_bound: 0
       - gene_reaction_rule: ""
       - rxnFrom: "HMRdatabase"
       - eccodes: ""
@@ -292979,6 +292979,26 @@
       - subsystem:
           - "Exchange/demand reactions"
       - confidence_score: 0
+    - !!omap
+      - id: "HMR_10133"
+      - name: ""
+      - metabolites: !!omap
+          - m02157c: -1
+          - m02630c: -1
+          - m02553c: -1
+          - m02039c: -1
+          - m02961c: 1
+          - m02552c: 1
+          - m02040c: 1
+      - lower_bound: 0
+      - upper_bound: 1000
+      - gene_reaction_rule: "ENSG00000010932"
+      - rxnFrom: ""
+      - eccodes: ""
+      - references: "PMID:32156684"
+      - subsystem:
+          - "Metabolism of other amino acids"
+      - confidence_score: 4
 - genes:
     - !!omap
       - id: "ENSG00000000419"

model/reactions.tsv

@@ -13081,3 +13081,4 @@ rxns	rxnKEGGID	rxnBiGGID	rxnEHMNID	rxnHepatoNET1ID	rxnREACTOMEID	rxnRecon3DID	rx
 "HMR_10130"	""	""	""	""	""	""	""	""	"RCR90174"	""	0	"MA-R10130"	""	""
 "HMR_10131"	""	""	""	""	""	""	""	""	"RCR90175"	""	0	"MA-R10131"	""	""
 "HMR_10132"	""	""	""	""	""	""	""	""	"RCR90179"	""	0	"MA-R10132"	""	""
+"HMR_10133"	""	""	""	""	""	""	""	""	""	""	0	"MA-R10133"	""	""