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Merge branch 'erin-virulencefinder' of https://github.com/StaPH-B/doc…
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kapsakcj committed Oct 12, 2024
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# VirulenceFinder Docker Image
# VirulenceFinder 3.0.0 Docker Image

A docker image that contains VirulenceFinder, a tool for identifying virulence factors in E. coli, Enterococcus, S. aureus, and Listeria isolates from reads or assemblies

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Additional tools:

- python 3.8.10
- biopython 1.73
- python 3.10.12
- cgecore 1.5.6
- biopython 1.84
- numpy 2.1.2
- pandas 2.2.3
- tabulate 0.9.0
- [kma](https://bitbucket.org/genomicepidemiology/kma/src/master/) 1.4.15
- ncbi-blast+ 2.9.0
- ncbi-blast+ 2.12.0

Database version:

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