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WIP: Load EpiSystem from disk (Scotland run) #79

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WIP: Load EpiSystem from disk (Scotland run) #79

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Commits on Aug 24, 2020

  1. First go at updating data_utils to use the datapipeline.

    @claireh93
    claireh93 committed Aug 24, 2020
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Commits on Aug 26, 2020

  1. Add new parameters to Scotland_run

    @claireh93
    claireh93 committed Aug 26, 2020
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Commits on Aug 27, 2020

  1. Fix to data config

    @claireh93
    claireh93 committed Aug 27, 2020
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  2. Add in case fatality and prob of hospitalisation.

    @claireh93
    claireh93 committed Aug 27, 2020
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  3. Add in lookup table to data config.

    @claireh93
    claireh93 committed Aug 27, 2020
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Commits on Aug 28, 2020

  1. Split Scotland run so that the EpiSystem is saved and loaded from disk.

    @claireh93
    claireh93 committed Aug 28, 2020
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  2. Add new tests for downloading population data from pipeline.

    @claireh93
    claireh93 committed Aug 28, 2020
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  3. Remove metadata yaml

    @claireh93
    claireh93 committed Aug 28, 2020
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  4. Remove metadata yaml

    @claireh93
    claireh93 committed Aug 28, 2020
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  5. That was a mistake - try adding metadata back in

    @claireh93
    claireh93 committed Aug 28, 2020
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Commits on Aug 31, 2020

  1. Move data download to its own folder - removes overwriting of metadat… 

    …a yaml.
    @claireh93
    claireh93 committed Aug 31, 2020
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Commits on Sep 2, 2020

  1. Add in latent period and docs for params/datasets

    @claireh93
    claireh93 committed Sep 2, 2020
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Commits on Sep 16, 2020

  1. Upload scripts for some model specific virus params.

    @claireh93
    claireh93 committed Sep 16, 2020
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Commits on Sep 29, 2020

  1. Add try catch statement to population data testing.

    @claireh93
    claireh93 committed Sep 29, 2020
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Commits on Sep 30, 2020

  1. Add higher threshold for codecov and ignore data_utils for now - cann… 

    …ot pull from ftp server
    @claireh93
    claireh93 committed Sep 30, 2020
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Commits on Oct 28, 2020

  1. Raise codecov threshold.

    @claireh93
    claireh93 committed Oct 28, 2020
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Commits on Oct 29, 2020

  1. Merge branch 'claireh93/datapipeline' into claireh93/separateepi

    @claireh93
    claireh93 committed Oct 29, 2020
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