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Merge pull request #225 from SainsburyWellcomeCentre/datajoint_presocial
Datajoint presocial
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from aeon.dj_pipeline import acquisition, lab, subject | ||
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experiment_type = "presocial0.1" | ||
experiment_names = ["presocial0.1-a2", "presocial0.1-a3", "presocial0.1-a4"] | ||
location = "4th floor" | ||
computers = ["AEON2", "AEON3", "AEON4"] | ||
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def create_new_experiment(): | ||
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lab.Location.insert1({"lab": "SWC", "location": location}, skip_duplicates=True) | ||
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acquisition.ExperimentType.insert1( | ||
{"experiment_type": experiment_type}, skip_duplicates=True | ||
) | ||
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acquisition.Experiment.insert( | ||
[{ | ||
"experiment_name": experiment_name, | ||
"experiment_start_time": "2023-02-25 00:00:00", | ||
"experiment_description": "presocial experiment 0.1", | ||
"arena_name": "circle-2m", | ||
"lab": "SWC", | ||
"location": location, | ||
"experiment_type": experiment_type | ||
} for experiment_name in experiment_names], | ||
skip_duplicates=True, | ||
) | ||
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acquisition.Experiment.Subject.insert( | ||
[ | ||
{"experiment_name": experiment_name, "subject": s} | ||
for experiment_name in experiment_names | ||
for s in subject.Subject.fetch("subject") | ||
], | ||
skip_duplicates=True, | ||
) | ||
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acquisition.Experiment.Directory.insert( | ||
[ | ||
{ | ||
"experiment_name": experiment_name, | ||
"repository_name": "ceph_aeon", | ||
"directory_type": "raw", | ||
"directory_path": f"aeon/data/raw/{computer}/{experiment_type}" | ||
} for experiment_name, computer in zip(experiment_names, computers) | ||
], | ||
skip_duplicates=True, | ||
) | ||
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def main(): | ||
create_new_experiment() | ||
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if __name__ == "__main__": | ||
main() |
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{"VideoController": "VideoController", "CameraTop": "VideoSource", "CameraWest": "VideoSource", "CameraEast": "VideoSource", "CameraNorth": "VideoSource", "CameraSouth": "VideoSource", "CameraPatch1": "VideoSource", "CameraPatch2": "VideoSource", "CameraNest": "VideoSource", "AudioAmbient": "AudioSource", "Patch1": "UndergroundFeeder", "Patch2": "UndergroundFeeder", "WeightNest": "WeightScale", "TrackingTop": "PositionTracking", "ActivityCenter": "ActivityTracking", "ActivityArena": "ActivityTracking", "ActivityNest": "ActivityTracking", "ActivityPatch1": "ActivityTracking", "ActivityPatch2": "ActivityTracking", "InNest": "RegionTracking", "InPatch1": "RegionTracking", "InPatch2": "RegionTracking", "ArenaCenter": "DistanceFromPoint", "InArena": "InRange", "InCorridor": "InRange", "ClockSynchronizer": "Synchronizer"} |
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