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Merge pull request #394 from ttngu207/datajoint_pipeline
Pull from `main`, minor updates to automated worker
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aeon/dj_pipeline/create_experiments/create_socialexperiment.py
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from pathlib import Path | ||
from datetime import datetime | ||
from aeon.dj_pipeline import acquisition | ||
from aeon.dj_pipeline.utils.paths import get_repository_path | ||
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# ---- Programmatic creation of a new social experiment ---- | ||
# Infer experiment metadata from the experiment name | ||
# User-specified "experiment_name" (everything else should be automatically inferred) | ||
experiment_name = "social0.4-aeon3" | ||
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# Find paths | ||
ceph_dir = get_repository_path("ceph_aeon") | ||
ceph_data_dir = ceph_dir / "aeon" / "data" | ||
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def create_new_social_experiment(experiment_name): | ||
exp_name, machine_name = experiment_name.split("-") | ||
raw_dir = ceph_data_dir / "raw" / machine_name.upper() / exp_name | ||
if not raw_dir.exists(): | ||
raise FileNotFoundError(f"Raw directory not found: {raw_dir}") | ||
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start_time = sorted([f.name for f in raw_dir.glob("*") if f.is_dir()])[0] | ||
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new_experiment_entry = { | ||
"experiment_name": experiment_name, | ||
"experiment_start_time": datetime.strptime(start_time, "%Y-%m-%dT%H-%M-%S"), | ||
"experiment_description": f"{exp_name.capitalize()} experiment on {machine_name.upper()} machine", | ||
"arena_name": "circle-2m", | ||
"lab": "SWC", | ||
"location": machine_name.upper(), | ||
"experiment_type": "social", | ||
} | ||
experiment_directories = [ | ||
{ | ||
"experiment_name": experiment_name, | ||
"repository_name": "ceph_aeon", | ||
"directory_type": dir_type, | ||
"directory_path": (ceph_data_dir / dir_type / machine_name.upper() / exp_name) | ||
.relative_to(ceph_dir) | ||
.as_posix(), | ||
"load_order": load_order, | ||
} | ||
for load_order, dir_type in enumerate(["processed", "raw"]) | ||
] | ||
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with acquisition.Experiment.connection.transaction: | ||
acquisition.Experiment.insert1( | ||
new_experiment_entry, | ||
skip_duplicates=True, | ||
) | ||
acquisition.Experiment.Directory.insert(experiment_directories, skip_duplicates=True) | ||
acquisition.Experiment.DevicesSchema.insert1( | ||
{"experiment_name": experiment_name, "devices_schema_name": exp_name.replace(".", "")}, | ||
skip_duplicates=True, | ||
) | ||
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