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Update base project config files #64

Update base project config files

Update base project config files #64

# Builds the aeon environment; lints formatting and smells via ruff; checks type annotations via pyright;
# tests via pytest; reports test coverage via pytest-cov and codecov.
name: build_env_run_tests
on:
pull_request:
branches: [ main ]
types: [opened, reopened, synchronize]
workflow_dispatch: # allows running manually from Github's 'Actions' tab
jobs:
build_env_pip_pyproject: # checks only for building env using pip and pyproject.toml
name: Build env using pip and pyproject.toml
runs-on: ubuntu-latest
strategy:
matrix:
os: [ubuntu-latest, windows-latest, macos-latest]
python-version: [3.11]
#include: # test other python versions only on ubuntu
#- os: ubuntu-latest
# python-version: [3.9, 3.10]
fail-fast: false
defaults:
run:
shell: bash -l {0} # reset shell for each step
steps:
- name: Checkout code
uses: actions/checkout@v2
- name: Set up Python
uses: actions/setup-python@v2
with:
python-version: ${{ matrix.python-version }}
- name: Create venv and install dependencies
run: |
python -m venv .venv
source .venv/bin/activate
pip install -e .[dev]
python -c "import aeon"
build_env_run_tests: # checks for building env using mamba and runs codebase checks and tests
name: Build env and run tests on ${{ matrix.os }}
runs-on: ${{ matrix.os }}
strategy:
matrix:
os: [ubuntu-latest, windows-latest, macos-latest]
python-version: [3.11]
fail-fast: false
defaults:
run:
shell: bash -l {0} # reset shell for each step
steps:
- name: checkout repo
uses: actions/checkout@v2
- name: set up conda env
uses: conda-incubator/setup-miniconda@v2
with:
use-mamba: true
miniforge-variant: Mambaforge
python-version: ${{ matrix.python-version }}
environment-file: ./env_config/env.yml
activate-environment: aeon
- name: Update conda env with dev reqs
run: mamba env update -f ./env_config/env_dev.yml
# Only run codebase checks and tests for ubuntu.
- name: ruff
if: matrix.os == 'ubuntu-latest' && matrix.python-version == '3.11'
run: python -m ruff check --config ./pyproject.toml .
- name: pyright
if: matrix.os == 'ubuntu-latest' && matrix.python-version == '3.11'
run: python -m pyright --level error --project ./pyproject.toml .
- name: pytest
if: matrix.os == 'ubuntu-latest' && matrix.python-version == '3.11'
run: python -m pytest tests/
- name: generate test coverage report
if: matrix.os == 'ubuntu-latest' && matrix.python-version == '3.11'
run: |
python -m pytest --cov=aeon ./tests/ --cov-report=xml:./tests/test_coverage/test_coverage_report.xml
#python -m pytest --cov=aeon ./tests/ --cov-report=html:./tests/test_coverage/test_coverage_report_html
- name: upload test coverage report to codecov
if: matrix.os == 'ubuntu-latest' && matrix.python-version == '3.11'
uses: codecov/codecov-action@v2
with:
token: ${{ secrets.CODECOV_TOKEN }}
directory: ./tests/test_coverage/
files: test_coverage_report.xml
fail_ci_if_error: true
verbose: true