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Version 1

Closed Aug 9, 2024 100% complete
  • Outputs should be correct
  • PyOPIA should be 'accessible' for users
    |- Getting started guide (processing - creating the STATS.h5)
    |- Getting started with using the STATS output and plotting
    |- High level admin & cmd line entry-points to help with processing folders of raw data:
    This kind of use: (pyopia)> pyopia process config.ini --inputfolder='DataFolder…
  • Outputs should be correct
  • PyOPIA should be 'accessible' for users
    |- Getting started guide (processing - creating the STATS.h5)
    |- Getting started with using the STATS output and plotting
    |- High level admin & cmd line entry-points to help with processing folders of raw data:
    This kind of use: (pyopia)> pyopia process config.ini --inputfolder='DataFolder' --outputfolder='Ouput'
    optional inputs could then overwrite what is defined in the config file
    information in the config file can be used to setup the steps and input settings to the functions in the pipeline
    process would create a STATS.h5 file from a folder of raw images using default standard steps definitions
    |- pyopia generate_config --holo
    would grab a lisst-holo.ini example from the repo and put it in the current directory, ready for use by 'pyopia process'

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