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added kinetic entry
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NellyMitnik committed Oct 29, 2023
1 parent 29b0247 commit 08c5480
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46 changes: 46 additions & 0 deletions input/kinetics/libraries/2BF_kinetics/dictionary.txt
Original file line number Diff line number Diff line change
Expand Up @@ -563,3 +563,49 @@ P2_22
1 O u0 p2 c0 {2,D}
2 O u0 p2 c0 {1,D}

R1_30
multiplicity 2
1 O u0 p2 c0 {5,S} {8,S}
2 C u0 p0 c0 {3,S} {4,S} {10,S} {11,S}
3 C u0 p0 c0 {2,S} {5,S} {14,S} {15,S}
4 C u0 p0 c0 {2,S} {9,S} {12,S} {13,S}
5 C u0 p0 c0 {1,S} {3,S} {6,D}
6 C u0 p0 c0 {5,D} {7,S} {16,S}
7 C u0 p0 c0 {6,S} {8,D} {17,S}
8 C u0 p0 c0 {1,S} {7,D} {20,S}
9 C u1 p0 c0 {4,S} {18,S} {19,S}
10 H u0 p0 c0 {2,S}
11 H u0 p0 c0 {2,S}
12 H u0 p0 c0 {4,S}
13 H u0 p0 c0 {4,S}
14 H u0 p0 c0 {3,S}
15 H u0 p0 c0 {3,S}
16 H u0 p0 c0 {6,S}
17 H u0 p0 c0 {7,S}
18 H u0 p0 c0 {9,S}
19 H u0 p0 c0 {9,S}
20 H u0 p0 c0 {8,S}

P1_30
multiplicity 2
1 O u0 p2 c0 {5,S} {9,S}
2 C u0 p0 c0 {3,S} {4,S} {10,S} {11,S}
3 C u0 p0 c0 {2,S} {6,S} {12,S} {13,S}
4 C u0 p0 c0 {2,S} {14,S} {15,S} {16,S}
5 C u0 p0 c0 {1,S} {6,D} {7,S}
6 C u0 p0 c0 {3,S} {5,D} {17,S}
7 C u0 p0 c0 {5,S} {8,D} {18,S}
8 C u0 p0 c0 {7,D} {9,S} {19,S}
9 C u1 p0 c0 {1,S} {8,S} {20,S}
10 H u0 p0 c0 {2,S}
11 H u0 p0 c0 {2,S}
12 H u0 p0 c0 {3,S}
13 H u0 p0 c0 {3,S}
14 H u0 p0 c0 {4,S}
15 H u0 p0 c0 {4,S}
16 H u0 p0 c0 {4,S}
17 H u0 p0 c0 {6,S}
18 H u0 p0 c0 {7,S}
19 H u0 p0 c0 {8,S}
20 H u0 p0 c0 {9,S}

45 changes: 45 additions & 0 deletions input/kinetics/libraries/2BF_kinetics/reactions.py
Original file line number Diff line number Diff line change
Expand Up @@ -562,5 +562,50 @@
""",
)

entry(
index = 12,
label = "R1_30 <=> P1_30",
degeneracy = 1.0,
kinetics = Arrhenius(A=(0.247407,'s^-1'), n=3.54516, Ea=(40.9301,'kJ/mol'), T0=(1,'K'), Tmin=(300,'K'), Tmax=(3000,'K')),
longDesc =
"""
TS method summary for TS0 in R1 <=> P1:
Methods that successfully generated a TS guess:
user guess 0 + autotst,autotst,autotst,autotst,
The method that generated the best TS guess and its output used for the optimization: user guess 0 + autotst
TS external symmetry: 1, TS optical isomers: 2
Optimized TS geometry:
O 1.99810900 1.01139900 -0.87807900
C -2.59608000 -0.13683700 0.06612800
C -1.30055300 -0.79516600 -0.46899600
C -2.14356200 0.88744800 1.08726600
C 1.11593500 0.08557500 -0.37136500
C -0.29275600 0.34975200 -0.56998300
C 1.82646700 -0.89139500 0.28687600
C 3.20691800 -0.54841600 0.17299500
C 3.25427200 0.60949400 -0.53841200
H -3.28667400 -0.88045600 0.47759200
H -3.11871400 0.36453700 -0.75503500
H -1.44555500 -1.31920200 -1.41778700
H -0.94489100 -1.53363300 0.25664800
H -0.84052700 1.02745200 0.40207000
H -1.84131400 0.50699300 2.06196700
H -2.64618300 1.84952600 1.12980000
H -0.46630100 1.01676000 -1.41666800
H 1.41221200 -1.75160900 0.78718600
H 4.05118200 -1.09319900 0.56502300
H 4.05781500 1.24107900 -0.87742200
1D rotors:
* Invalidated! pivots: [2, 4], dihedral: [3, 2, 4, 15], invalidation reason: initial and final points are inconsistent by more than 5.00 kJ/molinitial and final points are inconsistent by more than 5.00 kJ/mol But unable to propose troubleshooting methods.
* Invalidated! pivots: [2, 3], dihedral: [4, 2, 3, 6], invalidation reason: initial and final points are inconsistent by more than 5.00 kJ/molinitial and final points are inconsistent by more than 5.00 kJ/mol But unable to propose troubleshooting methods.
* Invalidated! pivots: [3, 6], dihedral: [2, 3, 6, 5], invalidation reason: initial and final points are inconsistent by more than 5.00 kJ/molinitial and final points are inconsistent by more than 5.00 kJ/mol But unable to propose troubleshooting methods.
pivots: [5, 6], dihedral: [1, 5, 6, 3], rotor symmetry: 1, max scan energy: 31.59 kJ/mol
""",
)



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