minor rxn label fix in 2FFOH +H Pdep lib #1263
Annotations
3 errors and 5 warnings
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Run conda-incubator/setup-miniconda@v2
The process '/usr/share/miniconda/condabin/conda' failed with exit code 1
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Functional tests
Process completed with exit code 2.
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Database tests
Process completed with exit code 2.
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The following actions uses node12 which is deprecated and will be forced to run on node16: actions/checkout@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
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Run conda-incubator/setup-miniconda@v2
WARNING conda.models.version:get_matcher(556): Using .* with relational operator is superfluous and deprecated and will be removed in a future version of conda. Your spec was 1.6.0.*, but conda is ignoring the .* and treating it as 1.6.0
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Run conda-incubator/setup-miniconda@v2
WARNING conda.models.version:get_matcher(556): Using .* with relational operator is superfluous and deprecated and will be removed in a future version of conda. Your spec was 1.8.0.*, but conda is ignoring the .* and treating it as 1.8.0
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Run conda-incubator/setup-miniconda@v2
WARNING conda.models.version:get_matcher(556): Using .* with relational operator is superfluous and deprecated and will be removed in a future version of conda. Your spec was 1.7.1.*, but conda is ignoring the .* and treating it as 1.7.1
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Run conda-incubator/setup-miniconda@v2
LinkError: post-link script failed for package conda-forge::julia-1.8.5-h783901f_0
location of failed script: /usr/share/miniconda/envs/rmg_env/bin/.julia-post-link.sh
==> script messages <==
Installing known registries into `/usr/share/miniconda/envs/rmg_env/share/julia`
ERROR: could not download https://pkg.julialang.org/registry/23338594-aafe-5451-b93e-139f81909106/78040e237e62335ced954c018c21c5b6f5b5cefe
Exception: HTTP/2 200 (Operation too slow. Less than 1 bytes/sec transferred the last 20 seconds) while requesting https://pkg.julialang.org/registry/23338594-aafe-5451-b93e-139f81909106/78040e237e62335ced954c018c21c5b6f5b5cefe
Stacktrace:
[1] pkgerror(msg::String)
@ Pkg.Types /usr/share/miniconda/envs/rmg_env/share/julia/stdlib/v1.8/Pkg/src/Types.jl:67
[2] download_registries(io::IOStream, regs::Vector{Pkg.Registry.RegistrySpec}, depot::String)
@ Pkg.Registry /usr/share/miniconda/envs/rmg_env/share/julia/stdlib/v1.8/Pkg/src/Registry/Registry.jl:177
[3] download_registries
@ /usr/share/miniconda/envs/rmg_env/share/julia/stdlib/v1.8/Pkg/src/Registry/Registry.jl:163 [inlined]
[4] download_default_registries(io::IOStream; only_if_empty::Bool)
@ Pkg.Registry /usr/share/miniconda/envs/rmg_env/share/julia/stdlib/v1.8/Pkg/src/Registry/Registry.jl:110
[5] download_default_registries(io::IOStream)
@ Pkg.Registry /usr/share/miniconda/envs/rmg_env/share/julia/stdlib/v1.8/Pkg/src/Registry/Registry.jl:97
[6] instantiate(ctx::Pkg.Types.Context; manifest::Nothing, update_registry::Bool, verbose::Bool, platform::Base.BinaryPlatforms.Platform, allow_build::Bool, allow_autoprecomp::Bool, kwargs::Base.Pairs{Symbol, Union{}, Tuple{}, NamedTuple{(), Tuple{}}})
@ Pkg.API /usr/share/miniconda/envs/rmg_env/share/julia/stdlib/v1.8/Pkg/src/API.jl:1506
[7] instantiate
@ /usr/share/miniconda/envs/rmg_env/share/julia/stdlib/v1.8/Pkg/src/API.jl:1502 [inlined]
[8] #instantiate#284
@ /usr/share/miniconda/envs/rmg_env/share/julia/stdlib/v1.8/Pkg/src/API.jl:1501 [inlined]
[9] instantiate()
@ Pkg.API /usr/share/miniconda/envs/rmg_env/share/julia/stdlib/v1.8/Pkg/src/API.jl:1501
[10] top-level scope
@ none:1
caused by: HTTP/2 200 (Operation too slow. Less than 1 bytes/sec transferred the last 20 seconds) while requesting https://pkg.julialang.org/registry/23338594-aafe-5451-b93e-139f81909106/78040e237e62335ced954c018c21c5b6f5b5cefe
Stacktrace:
[1] (::Downloads.var"#9#18"{IOStream, Base.DevNull, Nothing, Vector{Pair{String, String}}, Float64, Downloads.var"#24#27"{Pkg.PlatformEngines.var"#17#19"}, Bool, Nothing, Bool, String, Bool, Bool})(easy::Downloads.Curl.Easy)
@ Downloads /usr/share/miniconda/envs/rmg_env/share/julia/stdlib/v1.8/Downloads/src/Downloads.jl:387
[2] with_handle(f::Downloads.var"#9#18"{IOStream, Base.DevNull, Nothing, Vector{Pair{String, String}}, Float64, Downloads.var"#24#27"{Pkg.PlatformEngines.var"#17#19"}, Bool, Nothing, Bool, String, Bool, Bool}, handle::Downloads.Curl.Easy)
@ Downloads.Curl /usr/share/miniconda/envs/rmg_env/share/julia/stdlib/v1.8/Downloads/src/Curl/Curl.jl:88
[3] #8
@ /usr/share/miniconda/envs/rmg_env/share/julia/stdlib/v1.8/Downloads/src/Downloads.jl:328 [inlined]
[4] arg_write(f::Downloads.var"#8#17"{Base.DevNull, Nothing, Vector{Pair{String, String}}, Float64, Downloads.var"#24#27"{Pkg.PlatformEngines.var"#17#19"}, Bool, Nothing, Bool, String, Bool, Bool}, arg::IOStream)
@ ArgTools /usr/share/miniconda/envs/rmg_env/share/julia/stdlib/v1.8/ArgTools/src/ArgTools.jl:134
[5] #7
@ /usr/share/miniconda/envs/rmg_env/share/julia/stdlib/v1.8/Downloads/src/Downloads.jl:327 [inlined]
[6] arg_read(f::Downloads.var"#7#16"{IOStream, Nothing, Vector{Pair{String, String}}, Float64, Downloads.var"#24#27"{Pkg.PlatformEngines.var"#17#19"}, Bool, Nothing, Bool, String, Bool, Bool}, arg::Base.DevNull)
@ ArgTools /usr/share/miniconda/envs/rmg_env/share/julia/stdlib/v1.8/ArgTools/src/ArgTools.jl:76
[7] request(url::String; input::Nothing, output::IOStream, method::Nothing, headers::Vector{Pair{String, String}}, timeout::Float64, pr
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