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update to version 1.0.0 of the messaging lib #869

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merged 3 commits into from
Aug 29, 2023
Merged

update to version 1.0.0 of the messaging lib #869

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34dc1f2
update to version 1.0.0 of the messaging lib
neildsouth Aug 29, 2023
8216e2f
forgot licensing file
neildsouth Aug 29, 2023
22f776f
small fixes
neildsouth Aug 29, 2023
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10 changes: 6 additions & 4 deletions doc/dependency_decisions.yml
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Expand Up @@ -2364,22 +2364,24 @@
:when: 2022-10-21 05:32:02.785856125 Z
- - :approve
- Monai.Deploy.Messaging
- :who: samrooke
- :who: neildsouth
:why: Apache-2.0 (https://github.com/Project-MONAI/monai-deploy-messaging/raw/main/LICENSE)
:versions:
- 0.1.21
- 0.1.23
- 0.1.25
:when: 2022-12-15 21:43:10.781625468 Z
- 1.0.0
:when: 2023-29-08 21:43:10.781625468 Z
- - :approve
- Monai.Deploy.Messaging.RabbitMQ
- :who: samrooke
- :who: neildsouth
:why: Apache-2.0 (https://github.com/Project-MONAI/monai-deploy-messaging/raw/main/LICENSE)
:versions:
- 0.1.21
- 0.1.23
- 0.1.25
:when: 2022-12-15 21:43:20.975488411 Z
- 1.0.0
:when: 2023-29-08 21:43:20.975488411 Z
- - :approve
- Monai.Deploy.Storage
- :who: neildsouth
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2 changes: 1 addition & 1 deletion src/Common/Configuration/Monai.Deploy.WorkflowManager.Common.Configuration.csproj
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Expand Up @@ -31,7 +31,7 @@
</ItemGroup>

<ItemGroup>
<PackageReference Include="Monai.Deploy.Messaging" Version="0.1.25" />
<PackageReference Include="Monai.Deploy.Messaging" Version="1.0.0" />
<PackageReference Include="Monai.Deploy.Storage" Version="0.2.18" />
</ItemGroup>

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6 changes: 3 additions & 3 deletions src/Common/Configuration/packages.lock.json
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Expand Up @@ -4,9 +4,9 @@
"net6.0": {
"Monai.Deploy.Messaging": {
"type": "Direct",
"requested": "[0.1.25, )",
"resolved": "0.1.25",
"contentHash": "CllF1ANCwDV0ACbTU63SGxPPmgsivWP8dxgstAHvwo29w5TUs6PDCc8GcyVDTUO5Yl7/vsifdwcs3P/cYBe69w==",
"requested": "[1.0.0, )",
"resolved": "1.0.0",
"contentHash": "Xr1V3ZrSJByfUP4w+aiOAqC7Uzt1GqRXj35qSTQs9C1oI4gCiBN4wnre0SSvoA7vHQNZPGWNWXtiqbI7Cov3Mg==",
"dependencies": {
"Ardalis.GuardClauses": "4.1.1",
"Microsoft.Extensions.Diagnostics.HealthChecks": "6.0.21",
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8 changes: 4 additions & 4 deletions src/Common/Miscellaneous/packages.lock.json
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Expand Up @@ -133,8 +133,8 @@
},
"Monai.Deploy.Messaging": {
"type": "Transitive",
"resolved": "0.1.25",
"contentHash": "CllF1ANCwDV0ACbTU63SGxPPmgsivWP8dxgstAHvwo29w5TUs6PDCc8GcyVDTUO5Yl7/vsifdwcs3P/cYBe69w==",
"resolved": "1.0.0",
"contentHash": "Xr1V3ZrSJByfUP4w+aiOAqC7Uzt1GqRXj35qSTQs9C1oI4gCiBN4wnre0SSvoA7vHQNZPGWNWXtiqbI7Cov3Mg==",
"dependencies": {
"Ardalis.GuardClauses": "4.1.1",
"Microsoft.Extensions.Diagnostics.HealthChecks": "6.0.21",
Expand Down Expand Up @@ -205,10 +205,10 @@
"resolved": "6.0.0",
"contentHash": "TY8/9+tI0mNaUMgntOxxaq2ndTkdXqLSxvPmas7XEqOlv9lQtB7wLjYGd756lOaO7Dvb5r/WXhluM+0Xe87v5Q=="
},
"Monai.Deploy.WorkflowManager.Common.configuration": {
"monai.deploy.workflowmanager.common.configuration": {
"type": "Project",
"dependencies": {
"Monai.Deploy.Messaging": "[0.1.25, )",
"Monai.Deploy.Messaging": "[1.0.0, )",
"Monai.Deploy.Storage": "[0.2.18, )"
}
}
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2 changes: 1 addition & 1 deletion src/TaskManager/API/Monai.Deploy.WorkflowManager.TaskManager.API.csproj
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Expand Up @@ -39,7 +39,7 @@


<ItemGroup>
<PackageReference Include="Monai.Deploy.Messaging" Version="0.1.25" />
<PackageReference Include="Monai.Deploy.Messaging" Version="1.0.0" />
<PackageReference Include="Mongo.Migration" Version="3.1.4" />
<PackageReference Include="MongoDB.Bson" Version="2.19.0" />
</ItemGroup>
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6 changes: 3 additions & 3 deletions src/TaskManager/API/packages.lock.json
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Expand Up @@ -4,9 +4,9 @@
"net6.0": {
"Monai.Deploy.Messaging": {
"type": "Direct",
"requested": "[0.1.25, )",
"resolved": "0.1.25",
"contentHash": "CllF1ANCwDV0ACbTU63SGxPPmgsivWP8dxgstAHvwo29w5TUs6PDCc8GcyVDTUO5Yl7/vsifdwcs3P/cYBe69w==",
"requested": "[1.0.0, )",
"resolved": "1.0.0",
"contentHash": "Xr1V3ZrSJByfUP4w+aiOAqC7Uzt1GqRXj35qSTQs9C1oI4gCiBN4wnre0SSvoA7vHQNZPGWNWXtiqbI7Cov3Mg==",
"dependencies": {
"Ardalis.GuardClauses": "4.1.1",
"Microsoft.Extensions.Diagnostics.HealthChecks": "6.0.21",
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6 changes: 3 additions & 3 deletions src/TaskManager/Database/packages.lock.json
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Expand Up @@ -247,8 +247,8 @@
},
"Monai.Deploy.Messaging": {
"type": "Transitive",
"resolved": "0.1.25",
"contentHash": "CllF1ANCwDV0ACbTU63SGxPPmgsivWP8dxgstAHvwo29w5TUs6PDCc8GcyVDTUO5Yl7/vsifdwcs3P/cYBe69w==",
"resolved": "1.0.0",
"contentHash": "Xr1V3ZrSJByfUP4w+aiOAqC7Uzt1GqRXj35qSTQs9C1oI4gCiBN4wnre0SSvoA7vHQNZPGWNWXtiqbI7Cov3Mg==",
"dependencies": {
"Ardalis.GuardClauses": "4.1.1",
"Microsoft.Extensions.Diagnostics.HealthChecks": "6.0.21",
Expand Down Expand Up @@ -678,7 +678,7 @@
"monai.deploy.workflowmanager.taskmanager.api": {
"type": "Project",
"dependencies": {
"Monai.Deploy.Messaging": "[0.1.25, )",
"Monai.Deploy.Messaging": "[1.0.0, )",
"Mongo.Migration": "[3.1.4, )",
"MongoDB.Bson": "[2.19.0, )"
}
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12 changes: 6 additions & 6 deletions src/TaskManager/Plug-ins/AideClinicalReview/packages.lock.json
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Expand Up @@ -249,8 +249,8 @@
},
"Monai.Deploy.Messaging": {
"type": "Transitive",
"resolved": "0.1.25",
"contentHash": "CllF1ANCwDV0ACbTU63SGxPPmgsivWP8dxgstAHvwo29w5TUs6PDCc8GcyVDTUO5Yl7/vsifdwcs3P/cYBe69w==",
"resolved": "1.0.0",
"contentHash": "Xr1V3ZrSJByfUP4w+aiOAqC7Uzt1GqRXj35qSTQs9C1oI4gCiBN4wnre0SSvoA7vHQNZPGWNWXtiqbI7Cov3Mg==",
"dependencies": {
"Ardalis.GuardClauses": "4.1.1",
"Microsoft.Extensions.Diagnostics.HealthChecks": "6.0.21",
Expand Down Expand Up @@ -700,14 +700,14 @@
"resolved": "4.5.0",
"contentHash": "okurQJO6NRE/apDIP23ajJ0hpiNmJ+f0BwOlB/cSqTLQlw5upkf+5+96+iG2Jw40G1fCVCyPz/FhIABUjMR+RQ=="
},
"Monai.Deploy.WorkflowManager.Common.configuration": {
"monai.deploy.workflowmanager.common.configuration": {
"type": "Project",
"dependencies": {
"Monai.Deploy.Messaging": "[0.1.25, )",
"Monai.Deploy.Messaging": "[1.0.0, )",
"Monai.Deploy.Storage": "[0.2.18, )"
}
},
"Monai.Deploy.WorkflowManager.Common.miscellaneous": {
"monai.deploy.workflowmanager.common.miscellaneous": {
"type": "Project",
"dependencies": {
"Ardalis.GuardClauses": "[4.1.1, )",
Expand All @@ -719,7 +719,7 @@
"monai.deploy.workflowmanager.taskmanager.api": {
"type": "Project",
"dependencies": {
"Monai.Deploy.Messaging": "[0.1.25, )",
"Monai.Deploy.Messaging": "[1.0.0, )",
"Mongo.Migration": "[3.1.4, )",
"MongoDB.Bson": "[2.19.0, )"
}
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12 changes: 6 additions & 6 deletions src/TaskManager/Plug-ins/Argo/packages.lock.json
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Expand Up @@ -527,8 +527,8 @@
},
"Monai.Deploy.Messaging": {
"type": "Transitive",
"resolved": "0.1.25",
"contentHash": "CllF1ANCwDV0ACbTU63SGxPPmgsivWP8dxgstAHvwo29w5TUs6PDCc8GcyVDTUO5Yl7/vsifdwcs3P/cYBe69w==",
"resolved": "1.0.0",
"contentHash": "Xr1V3ZrSJByfUP4w+aiOAqC7Uzt1GqRXj35qSTQs9C1oI4gCiBN4wnre0SSvoA7vHQNZPGWNWXtiqbI7Cov3Mg==",
"dependencies": {
"Ardalis.GuardClauses": "4.1.1",
"Microsoft.Extensions.Diagnostics.HealthChecks": "6.0.21",
Expand Down Expand Up @@ -1180,14 +1180,14 @@
"resolved": "13.0.1",
"contentHash": "E1e/xFXB+Cbn7pLVlr+8E3nemEitIReVgmAMMMveADvZvXGuSGHP+1Cg6oA+SUfwXHfaXLQn4STCaPKtdIJkWA=="
},
"Monai.Deploy.WorkflowManager.Common.configuration": {
"monai.deploy.workflowmanager.common.configuration": {
"type": "Project",
"dependencies": {
"Monai.Deploy.Messaging": "[0.1.25, )",
"Monai.Deploy.Messaging": "[1.0.0, )",
"Monai.Deploy.Storage": "[0.2.18, )"
}
},
"Monai.Deploy.WorkflowManager.Common.miscellaneous": {
"monai.deploy.workflowmanager.common.miscellaneous": {
"type": "Project",
"dependencies": {
"Ardalis.GuardClauses": "[4.1.1, )",
Expand All @@ -1199,7 +1199,7 @@
"monai.deploy.workflowmanager.taskmanager.api": {
"type": "Project",
"dependencies": {
"Monai.Deploy.Messaging": "[0.1.25, )",
"Monai.Deploy.Messaging": "[1.0.0, )",
"Mongo.Migration": "[3.1.4, )",
"MongoDB.Bson": "[2.19.0, )"
}
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4 changes: 2 additions & 2 deletions src/TaskManager/TaskManager/Monai.Deploy.WorkflowManager.TaskManager.csproj
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Expand Up @@ -62,9 +62,9 @@
<PackageReference Include="Microsoft.Extensions.Hosting" Version="6.0.1" />
<PackageReference Include="Microsoft.Extensions.Options" Version="6.0.0" />
<PackageReference Include="Monai.Deploy.Storage" Version="0.2.18" />
<PackageReference Include="Monai.Deploy.Messaging" Version="0.1.25" />
<PackageReference Include="Monai.Deploy.Messaging" Version="1.0.0" />
<PackageReference Include="Monai.Deploy.Storage.MinIO" Version="0.2.18" />
<PackageReference Include="Monai.Deploy.Messaging.RabbitMQ" Version="0.1.25" />
<PackageReference Include="Monai.Deploy.Messaging.RabbitMQ" Version="1.0.0" />
<PackageReference Include="Monai.Deploy.Security" Version="0.1.3" />
<PackageReference Include="Mongo.Migration" Version="3.1.4" />
<PackageReference Include="NLog" Version="5.1.2" />
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22 changes: 11 additions & 11 deletions src/TaskManager/TaskManager/packages.lock.json
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Expand Up @@ -74,9 +74,9 @@
},
"Monai.Deploy.Messaging": {
"type": "Direct",
"requested": "[0.1.25, )",
"resolved": "0.1.25",
"contentHash": "CllF1ANCwDV0ACbTU63SGxPPmgsivWP8dxgstAHvwo29w5TUs6PDCc8GcyVDTUO5Yl7/vsifdwcs3P/cYBe69w==",
"requested": "[1.0.0, )",
"resolved": "1.0.0",
"contentHash": "Xr1V3ZrSJByfUP4w+aiOAqC7Uzt1GqRXj35qSTQs9C1oI4gCiBN4wnre0SSvoA7vHQNZPGWNWXtiqbI7Cov3Mg==",
"dependencies": {
"Ardalis.GuardClauses": "4.1.1",
"Microsoft.Extensions.Diagnostics.HealthChecks": "6.0.21",
Expand All @@ -86,11 +86,11 @@
},
"Monai.Deploy.Messaging.RabbitMQ": {
"type": "Direct",
"requested": "[0.1.25, )",
"resolved": "0.1.25",
"contentHash": "p/Si1XzNUiTdN1gYFKxYy9w/bVzOYooK9DEW7JJs8D8Sghzkvh0GyWV3vUO9dVkEcU0oT5HmZ4x+nz8BzAkz6g==",
"requested": "[1.0.0, )",
"resolved": "1.0.0",
"contentHash": "1UiWYO+EjNZSFrL/SUElqmBo3TktG+XiCXm8oyXheEWz/CuZS2hhepYB4BDz7XAohUqt2/Hv7wpLiaauiaIFZg==",
"dependencies": {
"Monai.Deploy.Messaging": "0.1.25",
"Monai.Deploy.Messaging": "1.0.0",
"Polly": "7.2.4",
"RabbitMQ.Client": "6.5.0"
}
Expand Down Expand Up @@ -1589,14 +1589,14 @@
"resolved": "0.6.2",
"contentHash": "jPao/LdUNLUz8rn3H1D8W7wQbZsRZM0iayvWI4xGejJg3XJHT56gcmYdgmCGPdJF1UEBqUjucCRrFB+4HbJsbw=="
},
"Monai.Deploy.WorkflowManager.Common.configuration": {
"monai.deploy.workflowmanager.common.configuration": {
"type": "Project",
"dependencies": {
"Monai.Deploy.Messaging": "[0.1.25, )",
"Monai.Deploy.Messaging": "[1.0.0, )",
"Monai.Deploy.Storage": "[0.2.18, )"
}
},
"Monai.Deploy.WorkflowManager.Common.miscellaneous": {
"monai.deploy.workflowmanager.common.miscellaneous": {
"type": "Project",
"dependencies": {
"Ardalis.GuardClauses": "[4.1.1, )",
Expand All @@ -1616,7 +1616,7 @@
"monai.deploy.workflowmanager.taskmanager.api": {
"type": "Project",
"dependencies": {
"Monai.Deploy.Messaging": "[0.1.25, )",
"Monai.Deploy.Messaging": "[1.0.0, )",
"Mongo.Migration": "[3.1.4, )",
"MongoDB.Bson": "[2.19.0, )"
}
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3 changes: 1 addition & 2 deletions src/WorkflowManager/Common/Services/PayloadService.cs
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Expand Up @@ -55,7 +55,7 @@
var _serviceScopeFactory = serviceScopeFactory ?? throw new ArgumentNullException(nameof(serviceScopeFactory));
var scope = _serviceScopeFactory.CreateScope();

_storageService = scope.ServiceProvider.GetService<IStorageService>() ?? throw new ArgumentNullException(nameof(IStorageService));

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The parameter name 'IStorageService' is not declared in the argument list. (https://rules.sonarsource.com/csharp/RSPEC-3928)
}

public async Task<Payload?> CreateAsync(WorkflowRequestEvent eventPayload)
Expand All @@ -82,8 +82,7 @@
FileCount = eventPayload.FileCount,
CorrelationId = eventPayload.CorrelationId,
Bucket = eventPayload.Bucket,
CalledAeTitle = eventPayload.CalledAeTitle,
CallingAeTitle = eventPayload.CallingAeTitle,
DataTrigger = eventPayload.DataTrigger,
Timestamp = eventPayload.Timestamp,
PatientDetails = patientDetails,
PayloadDeleted = PayloadDeleted.No
Expand Down Expand Up @@ -142,7 +141,7 @@
{
var payloadDto = new PayloadDto(payload);
var wfs = workflowInstances?.Where(wf => wf.PayloadId == payload.PayloadId);
if (wfs == null || wfs.Any() is false)

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Remove the unnecessary Boolean literal(s). (https://rules.sonarsource.com/csharp/RSPEC-1125)
{
payloadDto.PayloadStatus = PayloadStatus.Complete;
}
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52 changes: 52 additions & 0 deletions src/WorkflowManager/Contracts/Migrations/M003_Payload_addDataTrigger.cs
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@@ -0,0 +1,52 @@
//
// Copyright 2023 Guy’s and St Thomas’ NHS Foundation Trust
//
// Licensed under the Apache License, Version 2.0 (the "License");
// you may not use this file except in compliance with the License.
// You may obtain a copy of the License at
//
// http://www.apache.org/licenses/LICENSE-2.0
//
// Unless required by applicable law or agreed to in writing, software
// distributed under the License is distributed on an "AS IS" BASIS,
// WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
// See the License for the specific language governing permissions and
// limitations under the License.

using Monai.Deploy.Messaging.Events;
using Monai.Deploy.WorkflowManager.Common.Contracts.Models;
using Mongo.Migration.Migrations.Document;
using MongoDB.Bson;
using MongoDB.Bson.Serialization;

namespace Monai.Deploy.WorkflowManager.Common.Contracts.Migrations
{
public class M003_Payload_addDataTrigger : DocumentMigration<Payload>

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Rename class 'M003_Payload_addDataTrigger' to match pascal case naming rules, consider using 'M003PayloadaddDataTrigger'. (https://rules.sonarsource.com/csharp/RSPEC-101)
{
public M003_Payload_addDataTrigger() : base("1.0.3") { }

public override void Up(BsonDocument document)
{
var calling = document.GetValue("CallingAeTitle").AsString;
var called = document.GetValue("CalledAeTitle").AsString;
document.Remove("CallingAeTitle");
document.Remove("CalledAeTitle");
var trigger = new DataOrigin { DataService = DataService.DIMSE, Source = calling, Destination = called };
document.Add("DataTrigger", trigger.ToJson(), true);
}

public override void Down(BsonDocument document)
{
try
{
var trigger = BsonSerializer.Deserialize<DataOrigin>(document.GetValue("DataTrigger").ToBson());
document.Remove("DataTrigger");
document.Add("CallingAeTitle", trigger.Source);
document.Add("CalledAeTitle", trigger.Destination);
}
catch
{ // can ignore we dont want failures stopping startup !
}
}
}
}
15 changes: 9 additions & 6 deletions src/WorkflowManager/Contracts/Models/Payload.cs
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Expand Up @@ -17,6 +17,7 @@
using System;
using System.Collections.Generic;
using Monai.Deploy.Messaging.Common;
using Monai.Deploy.Messaging.Events;
using Monai.Deploy.WorkflowManager.Common.Contracts.Migrations;
using Mongo.Migration.Documents;
using Mongo.Migration.Documents.Attributes;
Expand All @@ -26,11 +27,11 @@

namespace Monai.Deploy.WorkflowManager.Common.Contracts.Models
{
[CollectionLocation("Payloads"), RuntimeVersion("1.0.1")]
[CollectionLocation("Payloads"), RuntimeVersion("1.0.3")]
public class Payload : IDocument
{
[JsonConverter(typeof(DocumentVersionConvert)), BsonSerializer(typeof(DocumentVersionConverBson))]
public DocumentVersion Version { get; set; } = new DocumentVersion(1, 0, 1);
public DocumentVersion Version { get; set; } = new DocumentVersion(1, 0, 3);

[JsonProperty(PropertyName = "id")]
public string Id { get; set; } = string.Empty;
Expand All @@ -53,11 +54,11 @@
[JsonProperty(PropertyName = "bucket")]
public string Bucket { get; set; } = string.Empty;

[JsonProperty(PropertyName = "calling_aetitle")]
public string CallingAeTitle { get; set; } = string.Empty;
//[JsonProperty(PropertyName = "calling_aetitle")]
//public string CallingAeTitle { get; set; } = string.Empty;

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Remove this commented out code. (https://rules.sonarsource.com/csharp/RSPEC-125)

[JsonProperty(PropertyName = "called_aetitle")]
public string CalledAeTitle { get; set; } = string.Empty;
//[JsonProperty(PropertyName = "called_aetitle")]
//public string CalledAeTitle { get; set; } = string.Empty;

[JsonProperty(PropertyName = "timestamp")]
public DateTime Timestamp { get; set; }
Expand All @@ -70,6 +71,8 @@

[JsonProperty(PropertyName = "patient_details")]
public PatientDetails PatientDetails { get; set; } = new PatientDetails();

public DataOrigin DataTrigger { get; set; } = new DataOrigin { DataService = DataService.DIMSE };
}

public enum PayloadDeleted
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3 changes: 1 addition & 2 deletions src/WorkflowManager/Contracts/Models/PayloadDto.cs
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Expand Up @@ -31,8 +31,7 @@ public PayloadDto(Payload payload)
FileCount = payload.FileCount;
CorrelationId = payload.CorrelationId;
Bucket = payload.Bucket;
CallingAeTitle = payload.CallingAeTitle;
CalledAeTitle = payload.CalledAeTitle;
DataTrigger = payload.DataTrigger;
Timestamp = payload.Timestamp;
Files = payload.Files;
PatientDetails = payload.PatientDetails;
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2 changes: 1 addition & 1 deletion src/WorkflowManager/Contracts/Monai.Deploy.WorkflowManager.Contracts.csproj
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Expand Up @@ -38,7 +38,7 @@


<ItemGroup>
<PackageReference Include="Monai.Deploy.Messaging" Version="0.1.25" />
<PackageReference Include="Monai.Deploy.Messaging" Version="1.0.0" />
<PackageReference Include="Mongo.Migration" Version="3.1.4" />
<PackageReference Include="MongoDB.Bson" Version="2.19.0" />
</ItemGroup>
Expand Down
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