Update dependencies

Signed-off-by: Victor Chang <[email protected]>
Project-MONAI · Sep 12, 2023 · 4966456 · 4966456
1 parent bf94fe8
commit 4966456
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Showing 47 changed files with 1,082 additions and 862 deletions.
diff --git a/.github/workflows/build.yml b/.github/workflows/build.yml
@@ -99,13 +99,12 @@ jobs:
           report-name: dockle-report
           failure-threshold: fatal
 
-      # Disable upload due to bug https://github.com/erzz/dockle-action/issues/18
-      # - name: Upload Dockle SARIF Report
-      #   uses: github/codeql-action/upload-sarif@v2
-      #   continue-on-error: true
-      #   if: ${{ contains(github.ref, 'refs/heads/main') || contains(github.head_ref, 'release/') }}
-      #   with:
-      #     sarif_file: dockle-report.sarif
+      - name: Upload Dockle SARIF Report
+        uses: github/codeql-action/upload-sarif@v2
+        continue-on-error: true
+        if: ${{ contains(github.ref, 'refs/heads/main') || contains(github.head_ref, 'release/') }}
+        with:
+          sarif_file: dockle-report.sarif
 
       - name: Trivy Vulnerability Scanner
         uses: aquasecurity/trivy-action@master

diff --git a/src/Common/Configuration/Monai.Deploy.WorkflowManager.Common.Configuration.csproj b/src/Common/Configuration/Monai.Deploy.WorkflowManager.Common.Configuration.csproj
@@ -31,7 +31,7 @@
   </ItemGroup>
 
   <ItemGroup>
-    <PackageReference Include="Monai.Deploy.Messaging" Version="1.0.0" />
+    <PackageReference Include="Monai.Deploy.Messaging" Version="1.0.1" />
     <PackageReference Include="Monai.Deploy.Storage" Version="0.2.18" />
   </ItemGroup>
 

diff --git a/src/Common/Configuration/packages.lock.json b/src/Common/Configuration/packages.lock.json
@@ -4,9 +4,9 @@
     "net6.0": {
       "Monai.Deploy.Messaging": {
         "type": "Direct",
-        "requested": "[1.0.0, )",
-        "resolved": "1.0.0",
-        "contentHash": "Xr1V3ZrSJByfUP4w+aiOAqC7Uzt1GqRXj35qSTQs9C1oI4gCiBN4wnre0SSvoA7vHQNZPGWNWXtiqbI7Cov3Mg==",
+        "requested": "[1.0.1, )",
+        "resolved": "1.0.1",
+        "contentHash": "w0+37sCMzhZg4vhYFG+9TKmDW+Dks5DOiTrJzdnT8xJCfH1MK6xkRnIf+dBfxes0wFwPiKueaUWDcUsg1RnadQ==",
         "dependencies": {
           "Ardalis.GuardClauses": "4.1.1",
           "Microsoft.Extensions.Diagnostics.HealthChecks": "6.0.21",

diff --git a/src/Common/Miscellaneous/Monai.Deploy.WorkflowManager.Common.Miscellaneous.csproj b/src/Common/Miscellaneous/Monai.Deploy.WorkflowManager.Common.Miscellaneous.csproj
@@ -48,8 +48,8 @@
 
   <ItemGroup>
     <PackageReference Include="Ardalis.GuardClauses" Version="4.1.1" />
-    <PackageReference Include="fo-dicom" Version="5.0.3" />
-    <PackageReference Include="Microsoft.Extensions.Diagnostics.HealthChecks.Abstractions" Version="6.0.21" />
+    <PackageReference Include="fo-dicom" Version="5.1.1" />
+    <PackageReference Include="Microsoft.Extensions.Diagnostics.HealthChecks.Abstractions" Version="6.0.22" />
   </ItemGroup>
 
   <ItemGroup>

diff --git a/src/Common/Miscellaneous/packages.lock.json b/src/Common/Miscellaneous/packages.lock.json
@@ -10,26 +10,28 @@
       },
       "fo-dicom": {
         "type": "Direct",
-        "requested": "[5.0.3, )",
-        "resolved": "5.0.3",
-        "contentHash": "OPkCQ9+X/fvGRokAAgjR8bOpai04qlnNHmq+LsgI+Kyug3yar2zk6IMOSSvPOLgWe0EG9ScdqH44AGKnviH5Rw==",
-        "dependencies": {
-          "Microsoft.Bcl.AsyncInterfaces": "1.1.1",
-          "Microsoft.Extensions.DependencyInjection": "2.2.0",
-          "Microsoft.Extensions.Options": "2.2.0",
-          "Microsoft.Toolkit.HighPerformance": "7.1.2",
+        "requested": "[5.1.1, )",
+        "resolved": "5.1.1",
+        "contentHash": "YraR81u9XuTN7l+pt6HzT0KvuhgWVZ9LCuHMH3zgFfAtv4peT1y+nYMSGwF9YqNP+oZnzh0s0PJ+vJMsTDpGIw==",
+        "dependencies": {
+          "CommunityToolkit.HighPerformance": "8.2.0",
+          "Microsoft.Bcl.AsyncInterfaces": "6.0.0",
+          "Microsoft.Bcl.HashCode": "1.1.1",
+          "Microsoft.Extensions.DependencyInjection": "6.0.1",
+          "Microsoft.Extensions.Logging": "6.0.0",
+          "Microsoft.Extensions.Options": "6.0.0",
           "System.Buffers": "4.5.1",
-          "System.Text.Encoding.CodePages": "4.6.0",
-          "System.Text.Encodings.Web": "4.7.2",
-          "System.Text.Json": "4.7.2",
+          "System.Text.Encoding.CodePages": "6.0.0",
+          "System.Text.Encodings.Web": "6.0.0",
+          "System.Text.Json": "6.0.7",
           "System.Threading.Channels": "6.0.0"
         }
       },
       "Microsoft.Extensions.Diagnostics.HealthChecks.Abstractions": {
         "type": "Direct",
-        "requested": "[6.0.21, )",
-        "resolved": "6.0.21",
-        "contentHash": "5FSA1euCRtbRqVgTn2ahgCG9Cy29UQXAZMCJLUlrQQaC5rko0+d/aq9SiFGIDP7cvoWUsatrlNdfc6UyOMV5aA=="
+        "requested": "[6.0.22, )",
+        "resolved": "6.0.22",
+        "contentHash": "yvz+0r3qAt6gNEKlGSBO1BXMhtD3Tt8yzU59dHASolpwlSHvgqy0tEP6KXn3MPoKlPr0CiAHUdzOwYSoljzRSg=="
       },
       "AWSSDK.Core": {
         "type": "Transitive",
@@ -44,10 +46,20 @@
           "AWSSDK.Core": "[3.7.200.13, 4.0.0)"
         }
       },
+      "CommunityToolkit.HighPerformance": {
+        "type": "Transitive",
+        "resolved": "8.2.0",
+        "contentHash": "iKzsPiSnXoQUN5AoApYmdfnLn9osNb+YCLWRr5PFmrDEQVIu7OeOyf4DPvNBvbqbYLZCfvHozPkulyv6zBQsFw=="
+      },
       "Microsoft.Bcl.AsyncInterfaces": {
+        "type": "Transitive",
+        "resolved": "6.0.0",
+        "contentHash": "UcSjPsst+DfAdJGVDsu346FX0ci0ah+lw3WRtn18NUwEqRt70HaOQ7lI72vy3+1LxtqI3T5GWwV39rQSrCzAeg=="
+      },
+      "Microsoft.Bcl.HashCode": {
         "type": "Transitive",
         "resolved": "1.1.1",
-        "contentHash": "yuvf07qFWFqtK3P/MRkEKLhn5r2UbSpVueRziSqj0yJQIKFwG1pq9mOayK3zE5qZCTs0CbrwL9M6R8VwqyGy2w=="
+        "contentHash": "MalY0Y/uM/LjXtHfX/26l2VtN4LDNZ2OE3aumNOHDLsT4fNYy2hiHXI4CXCqKpNUNm7iJ2brrc4J89UdaL56FA=="
       },
       "Microsoft.Extensions.Configuration.Abstractions": {
         "type": "Transitive",
@@ -59,10 +71,11 @@
       },
       "Microsoft.Extensions.DependencyInjection": {
         "type": "Transitive",
-        "resolved": "2.2.0",
-        "contentHash": "MZtBIwfDFork5vfjpJdG5g8wuJFt7d/y3LOSVVtDK/76wlbtz6cjltfKHqLx2TKVqTj5/c41t77m1+h20zqtPA==",
+        "resolved": "6.0.1",
+        "contentHash": "vWXPg3HJQIpZkENn1KWq8SfbqVujVD7S7vIAyFXXqK5xkf1Vho+vG0bLBCHxU36lD1cLLtmGpfYf0B3MYFi9tQ==",
         "dependencies": {
-          "Microsoft.Extensions.DependencyInjection.Abstractions": "2.2.0"
+          "Microsoft.Extensions.DependencyInjection.Abstractions": "6.0.0",
+          "System.Runtime.CompilerServices.Unsafe": "6.0.0"
         }
       },
       "Microsoft.Extensions.DependencyInjection.Abstractions": {
@@ -99,6 +112,18 @@
           "Microsoft.Extensions.FileProviders.Abstractions": "6.0.0"
         }
       },
+      "Microsoft.Extensions.Logging": {
+        "type": "Transitive",
+        "resolved": "6.0.0",
+        "contentHash": "eIbyj40QDg1NDz0HBW0S5f3wrLVnKWnDJ/JtZ+yJDFnDj90VoPuoPmFkeaXrtu+0cKm5GRAwoDf+dBWXK0TUdg==",
+        "dependencies": {
+          "Microsoft.Extensions.DependencyInjection": "6.0.0",
+          "Microsoft.Extensions.DependencyInjection.Abstractions": "6.0.0",
+          "Microsoft.Extensions.Logging.Abstractions": "6.0.0",
+          "Microsoft.Extensions.Options": "6.0.0",
+          "System.Diagnostics.DiagnosticSource": "6.0.0"
+        }
+      },
       "Microsoft.Extensions.Logging.Abstractions": {
         "type": "Transitive",
         "resolved": "6.0.4",
@@ -121,20 +146,10 @@
           "System.Runtime.CompilerServices.Unsafe": "6.0.0"
         }
       },
-      "Microsoft.NETCore.Platforms": {
-        "type": "Transitive",
-        "resolved": "3.0.0",
-        "contentHash": "TsETIgVJb/AKoYfSP+iCxkuly5d3inZjTdx/ItZLk2CxY85v8083OBS3uai84kK3/baLnS5/b5XGs6zR7SuuHQ=="
-      },
-      "Microsoft.Toolkit.HighPerformance": {
-        "type": "Transitive",
-        "resolved": "7.1.2",
-        "contentHash": "cezzRky0BUJyYmSrcQUcX8qAv90JfUwCqWEbqfWZLHyeANo9/LWgW6y50pqbyc8r8SPXVsu2GNH98fB3VxrnvA=="
-      },
       "Monai.Deploy.Messaging": {
         "type": "Transitive",
-        "resolved": "1.0.0",
-        "contentHash": "Xr1V3ZrSJByfUP4w+aiOAqC7Uzt1GqRXj35qSTQs9C1oI4gCiBN4wnre0SSvoA7vHQNZPGWNWXtiqbI7Cov3Mg==",
+        "resolved": "1.0.1",
+        "contentHash": "w0+37sCMzhZg4vhYFG+9TKmDW+Dks5DOiTrJzdnT8xJCfH1MK6xkRnIf+dBfxes0wFwPiKueaUWDcUsg1RnadQ==",
         "dependencies": {
           "Ardalis.GuardClauses": "4.1.1",
           "Microsoft.Extensions.Diagnostics.HealthChecks": "6.0.21",
@@ -172,6 +187,14 @@
         "resolved": "4.5.1",
         "contentHash": "Rw7ijyl1qqRS0YQD/WycNst8hUUMgrMH4FCn1nNm27M4VxchZ1js3fVjQaANHO5f3sN4isvP4a+Met9Y4YomAg=="
       },
+      "System.Diagnostics.DiagnosticSource": {
+        "type": "Transitive",
+        "resolved": "6.0.0",
+        "contentHash": "frQDfv0rl209cKm1lnwTgFPzNigy2EKk1BS3uAvHvlBVKe5cymGyHO+Sj+NLv5VF/AhHsqPIUUwya5oV4CHMUw==",
+        "dependencies": {
+          "System.Runtime.CompilerServices.Unsafe": "6.0.0"
+        }
+      },
       "System.IO.Abstractions": {
         "type": "Transitive",
         "resolved": "17.2.3",
@@ -184,21 +207,28 @@
       },
       "System.Text.Encoding.CodePages": {
         "type": "Transitive",
-        "resolved": "4.6.0",
-        "contentHash": "OCUK9C/U97+UheVwo+JE+IUcKySUE3Oe+BcHhVtQrvmKSUFLrUDO8B5zEPRL6mBGbczxZp4w1boSck6/fw4dog==",
+        "resolved": "6.0.0",
+        "contentHash": "ZFCILZuOvtKPauZ/j/swhvw68ZRi9ATCfvGbk1QfydmcXBkIWecWKn/250UH7rahZ5OoDBaiAudJtPvLwzw85A==",
         "dependencies": {
-          "Microsoft.NETCore.Platforms": "3.0.0"
+          "System.Runtime.CompilerServices.Unsafe": "6.0.0"
         }
       },
       "System.Text.Encodings.Web": {
         "type": "Transitive",
-        "resolved": "4.7.2",
-        "contentHash": "iTUgB/WtrZ1sWZs84F2hwyQhiRH6QNjQv2DkwrH+WP6RoFga2Q1m3f9/Q7FG8cck8AdHitQkmkXSY8qylcDmuA=="
+        "resolved": "6.0.0",
+        "contentHash": "Vg8eB5Tawm1IFqj4TVK1czJX89rhFxJo9ELqc/Eiq0eXy13RK00eubyU6TJE6y+GQXjyV5gSfiewDUZjQgSE0w==",
+        "dependencies": {
+          "System.Runtime.CompilerServices.Unsafe": "6.0.0"
+        }
       },
       "System.Text.Json": {
         "type": "Transitive",
-        "resolved": "4.7.2",
-        "contentHash": "TcMd95wcrubm9nHvJEQs70rC0H/8omiSGGpU4FQ/ZA1URIqD4pjmFJh2Mfv1yH1eHgJDWTi2hMDXwTET+zOOyg=="
+        "resolved": "6.0.7",
+        "contentHash": "/Tf/9XjprpHolbcDOrxsKVYy/mUG/FS7aGd9YUgBVEiHeQH4kAE0T1sMbde7q6B5xcrNUsJ5iW7D1RvHudQNqA==",
+        "dependencies": {
+          "System.Runtime.CompilerServices.Unsafe": "6.0.0",
+          "System.Text.Encodings.Web": "6.0.0"
+        }
       },
       "System.Threading.Channels": {
         "type": "Transitive",
@@ -208,7 +238,7 @@
       "monai.deploy.workflowmanager.common.configuration": {
         "type": "Project",
         "dependencies": {
-          "Monai.Deploy.Messaging": "[1.0.0, )",
+          "Monai.Deploy.Messaging": "[1.0.1, )",
           "Monai.Deploy.Storage": "[0.2.18, )"
         }
       }

diff --git a/src/TaskManager/API/Monai.Deploy.WorkflowManager.TaskManager.API.csproj b/src/TaskManager/API/Monai.Deploy.WorkflowManager.TaskManager.API.csproj
@@ -39,9 +39,9 @@
 
 
   <ItemGroup>
-    <PackageReference Include="Monai.Deploy.Messaging" Version="1.0.0" />
+    <PackageReference Include="Monai.Deploy.Messaging" Version="1.0.1" />
     <PackageReference Include="Mongo.Migration" Version="3.1.4" />
-    <PackageReference Include="MongoDB.Bson" Version="2.19.0" />
+    <PackageReference Include="MongoDB.Bson" Version="2.21.0" />
   </ItemGroup>
 
 </Project>
diff --git a/src/TaskManager/API/packages.lock.json b/src/TaskManager/API/packages.lock.json
@@ -4,9 +4,9 @@
     "net6.0": {
       "Monai.Deploy.Messaging": {
         "type": "Direct",
-        "requested": "[1.0.0, )",
-        "resolved": "1.0.0",
-        "contentHash": "Xr1V3ZrSJByfUP4w+aiOAqC7Uzt1GqRXj35qSTQs9C1oI4gCiBN4wnre0SSvoA7vHQNZPGWNWXtiqbI7Cov3Mg==",
+        "requested": "[1.0.1, )",
+        "resolved": "1.0.1",
+        "contentHash": "w0+37sCMzhZg4vhYFG+9TKmDW+Dks5DOiTrJzdnT8xJCfH1MK6xkRnIf+dBfxes0wFwPiKueaUWDcUsg1RnadQ==",
         "dependencies": {
           "Ardalis.GuardClauses": "4.1.1",
           "Microsoft.Extensions.Diagnostics.HealthChecks": "6.0.21",
@@ -38,10 +38,11 @@
       },
       "MongoDB.Bson": {
         "type": "Direct",
-        "requested": "[2.19.0, )",
-        "resolved": "2.19.0",
-        "contentHash": "pGp9F2PWU3Dj54PiXKibuaQ5rphWkfp8/Nsy5jLp2dWZGRGlr3r/Lfwnr0PvfihFfxieUcJZ2z3VeO8RctXcvA==",
+        "requested": "[2.21.0, )",
+        "resolved": "2.21.0",
+        "contentHash": "QT+D1I3Jz6r6S6kCgJD1L9dRCLVJCKlkGRkA+tJ7uLpHRmjDNcNKy4D1T+L9gQrjl95lDN9PHdwEytdvCW/jzA==",
         "dependencies": {
+          "System.Memory": "4.5.5",
           "System.Runtime.CompilerServices.Unsafe": "5.0.0"
         }
       },
@@ -485,6 +486,11 @@
           "System.Runtime": "4.1.0"
         }
       },
+      "System.Memory": {
+        "type": "Transitive",
+        "resolved": "4.5.5",
+        "contentHash": "XIWiDvKPXaTveaB7HVganDlOCRoj03l+jrwNvcge/t8vhGYKvqV+dMv6G4SAX2NoNmN0wZfVPTAlFwZcZvVOUw=="
+      },
       "System.Reflection": {
         "type": "Transitive",
         "resolved": "4.3.0",

diff --git a/src/TaskManager/Database/Monai.Deploy.WorkflowManager.TaskManager.Database.csproj b/src/TaskManager/Database/Monai.Deploy.WorkflowManager.TaskManager.Database.csproj
@@ -34,7 +34,7 @@
   </ItemGroup>
 
   <ItemGroup>
-    <PackageReference Include="MongoDB.Driver" Version="2.19.0" />
+    <PackageReference Include="MongoDB.Driver" Version="2.21.0" />
   </ItemGroup>
 
   <ItemGroup>

diff --git a/src/TaskManager/Database/packages.lock.json b/src/TaskManager/Database/packages.lock.json
@@ -4,14 +4,14 @@
     "net6.0": {
       "MongoDB.Driver": {
         "type": "Direct",
-        "requested": "[2.19.0, )",
-        "resolved": "2.19.0",
-        "contentHash": "W/1YByn5gNGfHBe8AyDURXWKn1Z9xJ9IUjplFcvk8B/jlTlDOkmXgmwjlToIdqr0l8rX594kksjGx3a9if3dsg==",
+        "requested": "[2.21.0, )",
+        "resolved": "2.21.0",
+        "contentHash": "VxKj1wuhadiXhaXkykCWRgsYOysdaOYJ202hJFz25UjkrqC/tHA8RS4hdS5HYfGWoI//fypBXnxZCkEjXLXdfw==",
         "dependencies": {
           "Microsoft.Extensions.Logging.Abstractions": "2.0.0",
-          "MongoDB.Bson": "2.19.0",
-          "MongoDB.Driver.Core": "2.19.0",
-          "MongoDB.Libmongocrypt": "1.7.0"
+          "MongoDB.Bson": "2.21.0",
+          "MongoDB.Driver.Core": "2.21.0",
+          "MongoDB.Libmongocrypt": "1.8.0"
         }
       },
       "Ardalis.GuardClauses": {
@@ -247,8 +247,8 @@
       },
       "Monai.Deploy.Messaging": {
         "type": "Transitive",
-        "resolved": "1.0.0",
-        "contentHash": "Xr1V3ZrSJByfUP4w+aiOAqC7Uzt1GqRXj35qSTQs9C1oI4gCiBN4wnre0SSvoA7vHQNZPGWNWXtiqbI7Cov3Mg==",
+        "resolved": "1.0.1",
+        "contentHash": "w0+37sCMzhZg4vhYFG+9TKmDW+Dks5DOiTrJzdnT8xJCfH1MK6xkRnIf+dBfxes0wFwPiKueaUWDcUsg1RnadQ==",
         "dependencies": {
           "Ardalis.GuardClauses": "4.1.1",
           "Microsoft.Extensions.Diagnostics.HealthChecks": "6.0.21",
@@ -279,22 +279,23 @@
       },
       "MongoDB.Bson": {
         "type": "Transitive",
-        "resolved": "2.19.0",
-        "contentHash": "pGp9F2PWU3Dj54PiXKibuaQ5rphWkfp8/Nsy5jLp2dWZGRGlr3r/Lfwnr0PvfihFfxieUcJZ2z3VeO8RctXcvA==",
+        "resolved": "2.21.0",
+        "contentHash": "QT+D1I3Jz6r6S6kCgJD1L9dRCLVJCKlkGRkA+tJ7uLpHRmjDNcNKy4D1T+L9gQrjl95lDN9PHdwEytdvCW/jzA==",
         "dependencies": {
+          "System.Memory": "4.5.5",
           "System.Runtime.CompilerServices.Unsafe": "5.0.0"
         }
       },
       "MongoDB.Driver.Core": {
         "type": "Transitive",
-        "resolved": "2.19.0",
-        "contentHash": "KbzJJJc4EsUZ+YQoe7zZL1OxHVC9RjgQMso2LjhZWnlP+IHSON63vKNt7jGarXrOVXK0DqIUrRwQyXMgmqTX5g==",
+        "resolved": "2.21.0",
+        "contentHash": "Ac44U3bQfinmdH5KNFjTidJe9LKW87SxkXJ3YuIUJQMITEc4083YF1yvjJxaSeYF9er0YgHSmwhHpsZv0Fwplg==",
         "dependencies": {
           "AWSSDK.SecurityToken": "3.7.100.14",
           "DnsClient": "1.6.1",
           "Microsoft.Extensions.Logging.Abstractions": "2.0.0",
-          "MongoDB.Bson": "2.19.0",
-          "MongoDB.Libmongocrypt": "1.7.0",
+          "MongoDB.Bson": "2.21.0",
+          "MongoDB.Libmongocrypt": "1.8.0",
           "SharpCompress": "0.30.1",
           "Snappier": "1.0.0",
           "System.Buffers": "4.5.1",
@@ -303,8 +304,8 @@
       },
       "MongoDB.Libmongocrypt": {
         "type": "Transitive",
-        "resolved": "1.7.0",
-        "contentHash": "p9+peTZX63nGHskOLhvhfBtrknxNg1RzXepE07rPozuCGz27bMjCcQyvn2YByg0L3YEcNWdTmI4BlnG/5RF+5Q=="
+        "resolved": "1.8.0",
+        "contentHash": "fgNw8Dxpkq7mpoaAYes8cfnPRzvFIoB8oL9GPXwi3op/rONftl0WAeg4akRLcxfoVuUvuUO2wGoVBr3JzJ7Svw=="
       },
       "Newtonsoft.Json": {
         "type": "Transitive",
@@ -515,6 +516,11 @@
           "System.Runtime": "4.1.0"
         }
       },
+      "System.Memory": {
+        "type": "Transitive",
+        "resolved": "4.5.5",
+        "contentHash": "XIWiDvKPXaTveaB7HVganDlOCRoj03l+jrwNvcge/t8vhGYKvqV+dMv6G4SAX2NoNmN0wZfVPTAlFwZcZvVOUw=="
+      },
       "System.Reflection": {
         "type": "Transitive",
         "resolved": "4.3.0",
@@ -678,9 +684,9 @@
       "monai.deploy.workflowmanager.taskmanager.api": {
         "type": "Project",
         "dependencies": {
-          "Monai.Deploy.Messaging": "[1.0.0, )",
+          "Monai.Deploy.Messaging": "[1.0.1, )",
           "Mongo.Migration": "[3.1.4, )",
-          "MongoDB.Bson": "[2.19.0, )"
+          "MongoDB.Bson": "[2.21.0, )"
         }
       }
     }