mmm

CHANGELOG.md

@@ -3,15 +3,15 @@
 #### Enhancements
  - `dosing_automation.vial_volume` replaced with `liquid_volume`.
  - Adding a SQL table for tracking `liquid_volume`
+ - Because we are now storing `liquid_volume` in the database, you can add charts in the UI that track the volume over time:
+    1. Add the following yaml contents to `~/.pioreactor/plugins/contrib/charts/lqiuid_volume.yaml`: https://gist.github.com/CamDavidsonPilon/95eef30189101da69f706d02ef28d972
+    2. In your config.ini, under `ui.overview.charts`, add the line `liquid_volume=1`.
  - New dataset exports from the Export data page in the UI: calibrations and liquid-volumes.
  - Added a "partition by unit" option to the Export data page that will create a csv per Pioreactor in the export, instead of grouping them all together.
  - od calibrations can use the `-f` to edit calibration polynomial coefficients.
  - faster UI response times when starting jobs
  - faster syncing configs
  - faster copying files across cluster via `pio cp`
- - Because we are now storing `liquid_volume` in the database, you can add charts in the UI that track the volume over time:
-    1. Add the following yaml contents to `~/.pioreactor/plugins/contrib/charts/lqiuid_volume.yaml`: https://gist.github.com/CamDavidsonPilon/95eef30189101da69f706d02ef28d972
-    2. In your config.ini, under `ui.overview.charts`, add the line `liquid_volume=1`.
  - New API endpoints for getting the current settings of a _running_ job:
     - Per pioreactor:
       - GET: `/unit_api/jobs/settings/job_name/<job_name>`
@@ -22,7 +22,7 @@
       - GET: `/api/jobs/settings/job_name/<job_name>/experiments/<experiment>/setting/<setting>`
       - GET: `/api/jobs/settings/workers/<unit>/job_name/<job_name>/experiments/<experiment>`
       - GET: `/api/jobs/settings/workers/<unit>/job_name/<job_name>/experiments/<experiment>/setting/<setting>`
-   Ex: query the temperature of a Pioreactor: `curl pio01.local/unit_api/jobs/settings/job_name/temperature_automation/setting/temperature`
+   Ex: query the temperature of a Pioreactor: `curl http://pio01.local/unit_api/jobs/settings/job_name/temperature_automation/setting/temperature`
 
 
 #### Breaking changes

bumpver.toml

@@ -12,11 +12,14 @@ push = true
 
 [bumpver.file_patterns]
 "setup.py" = [
-    'version="{pep440_version}",',
+    'version="{pep440_version}",'
 ]
 "bumpver.toml" = [
     'current_version = "{version}"',
 ]
 "pioreactor/version.py" = [
     '^__version__ = "{version}"$',
 ]
+"CHANGELOG.md" = [
+    '^### {version}$',
+]

pioreactor/logging.py

@@ -78,7 +78,7 @@ def json_record(self, message: str, extra: dict, record: logging.LogRecord) -> d
         extra["level"] = record.levelname
         extra["task"] = record.name
         extra["timestamp"] = current_utc_timestamp()
-        extra["source"] = record.source  # type: ignore
+        extra["source"] = getattr(record, "source", None)  # type: ignore
 
         if record.exc_info:
             extra["message"] += "\n" + self.formatException(record.exc_info)
@@ -217,7 +217,9 @@ def create_logger(
         assert pub_client is not None
 
         # create MQTT handlers for logs table
-        topic = f"pioreactor/{unit}/{experiment}/logs/{source}"  # NOTE: we append the log-level, ex: /debug
+        topic = (
+            f"pioreactor/{unit}/{experiment}/logs/{source}"  # NOTE: we later append the log-level, ex: /debug
+        )
         mqtt_to_db_handler = MQTTHandler(topic, pub_client)
         mqtt_to_db_handler.setLevel(logging.DEBUG)
         mqtt_to_db_handler.setFormatter(CustomisedJSONFormatter())