fix python example to use common_user_input json file (#23)

mydoc/mydoc_cmor3_python.md

@@ -8,7 +8,7 @@ permalink: /mydoc_cmor3_python/
 ### CMOR user Input
 
 
-[test_doc.json](https://github.com/PCMDI/cmor/blob/master/Test/test_doc.json)
+[common_user_input.json](https://github.com/PCMDI/cmor/blob/master/Test/common_user_input.json)
 
 ```json
 {
@@ -18,42 +18,66 @@ permalink: /mydoc_cmor3_python/
            "tracking_prefix":        "hdl:21.14100",
            "activity_id":            "ISMIP6",
 
+           "branch_method":          "standard",
+           "branch_time_in_child":   "365.0",
+
+           "#output":                "Output Path where files are written",
            "outpath":                "CMIP6",
 
+           "#experiment_id":         "CMIP6 valid experiment_ids are found in CMIP6_CV.json",
            "experiment_id":          "piControl-withism",
            "sub_experiment_id":      "none",
            "sub_experiment":         "none",
 
            "source_type":            "AOGCM ISM AER",
+           "parent_mip_era":         "N/A",
            "mip_era":                "CMIP6",
            "calendar":               "360_day",
-           "branch_time":            "0",
+           "branch_time":            "1.34",
 
-           "realization_index":      "1",
+           "realization_index":      "11",
            "initialization_index":   "1",
            "physics_index":          "1",
            "forcing_index":          "1",
 
+           "#contact ":              "Not required",
            "contact ":              "Python Coder ([email protected])",
 
+           "#history":               "not required, supplemented by CMOR",
            "history":                "Output from archivcl_A1.nce/giccm_03_std_2xCO2_2256.",
+
+           "#comment":               "Not required",
            "comment":                "Equilibrium reached after 30-year spin-up after which data were output starting with nominal date of January 2030",
 
+           "#references":            "Not required",
            "references":             "Model described by Koder and Tolkien (J. Geophys. Res., 2001, 576-591).  Also see http://www.GICC.su/giccm/doc/index.html  2XCO2 simulation described in Dorkey et al. '(Clim. Dyn., 2003, 323-357.)'",
 
-           "grid":                   "native atmosphere T63 gaussian grid (64x128 latxlon)",
-           "grid_label":             "gn",
+           "grid":                   "gs1x1",
+           "grid_label":             "gr",
            "nominal_resolution":     "5 km",
 
            "institution_id":         "PCMDI",
 
+           "parent_activity_id":     "CMIP",
+           "parent_experiment_id":   "histALL",
+           "parent_source_id":       "GFDL-CM2-1",
+           "parent_variant_label":   "r1i1p1f3",
+
+
+           "#run_variant":           "Description of run variant (Recommended).",
            "run_variant":            "forcing: black carbon aerosol only",
 
+           "#source_id":              "Model Source",
            "source_id":               "PCMDI-test-1-0",
-           "source":                  "PCMDI-test 1.0",
 
+           "#source":                "source title, first part is source_id",
+           "source":                 "PCMDI-test 1.0",
+
+
+           "#output_path_template":   "Template for output path directory using tables keys or global attributes",
            "output_path_template":    "<activity_id><institution_id><source_id><experiment_id><variant_label><table><variable_id><grid_label><version>",
            "output_file_template":    "<variable_id><table><experiment_id><source_id><variant_label><grid_label>",
+
            "license":                  "CMIP6 model data produced by PCMDI is licensed under a Creative Commons Attribution \"Share Alike\" 4.0 International License (http://creativecommons.org/licenses/by/4.0/). Use of the data should be acknowledged following guidelines found at https://pcmdi.llnl.gov/home/CMIP6/citation.html. [Permissions beyond the scope of this license may be available at http://pcmdi.llnl.gov.] Further information about this data, including some limitations, can be found via the further_info_url (recorded as a global attribute in data files). The data producers and data providers make no warranty, either express or implied, including, but not limited to, warranties of merchantability and fitness for a particular purpose. All liabilities arising from the supply of the information (including any liability arising in negligence) are excluded to the fullest extent permitted by law."
 
 }
@@ -72,8 +96,8 @@ import cmor
 
 cmor.setup(inpath='Tables',netcdf_file_action=cmor.CMOR_REPLACE_4)
 
-cmor.dataset_json("Test/test_doc.json")
-
+cmor.dataset_json("Test/common_user_input.json")
+    
 table='CMIP6_Amon.json'
 cmor.load_table(table)
 
@@ -91,10 +115,12 @@ ilon = cmor.axis(table_entry= 'longitude',
                  cell_bounds= [89, 91])
 
 axis_ids = [itime,ilat,ilon]
-
+              
 varid = cmor.variable('ts', 'K', axis_ids)
 cmor.write(varid, [273])
 outfile=cmor.close(varid, file_name=True)
 print "File written: ",outfile
 cmor.close()
+
+
 ```