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test(analyses): 8.0.0 testing protocols into analyses battery (#16407)
# Overview Get these into edge ASAP! - [x] Josh reviewed the snapshots PR making sure that protocols with **X** had errors in the snapshot and **S** do not. Not much else to review. We need these in so that PRs to edge are also running against these snapshots. --------- Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com> Co-authored-by: y3rsh <[email protected]>
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| Original file line number | Diff line number | Diff line change |
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| # Use Python 3.10 as the base image | ||
| FROM python:3.10-slim-bullseye | ||
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| # Update packages and install dependencies | ||
| RUN apt-get update && \ | ||
| apt-get upgrade -y && \ | ||
| apt-get install -y git libsystemd-dev build-essential pkg-config network-manager | ||
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| # Define build arguments | ||
| ARG OPENTRONS_VERSION=edge | ||
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| # Set the working directory | ||
| WORKDIR /opentrons | ||
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| # Clone the Opentrons repository | ||
| ARG CACHEBUST=1 | ||
| RUN git clone --branch $OPENTRONS_VERSION --depth 1 https://github.com/Opentrons/opentrons . | ||
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| # Install dependencies | ||
| RUN make setup-py -j | ||
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| WORKDIR /opentrons/robot-server | ||
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| # Set the port via environment variable | ||
| ENV PORT=31950 | ||
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| # Expose the port | ||
| EXPOSE ${PORT} | ||
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| # Default command | ||
| CMD ["sh", "-c", "python -m pipenv run uvicorn robot_server.app:app --host 0.0.0.0 --port ${PORT} --ws wsproto --lifespan on"] |
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analyses-snapshot-testing/files/protocols/Flex_S_v2_20_1000M_Simple.py
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| from opentrons.protocol_api import PARTIAL_COLUMN | ||
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| metadata = { | ||
| "protocolName": "flex_8channel_1000 Simple", | ||
| "description": "A protocol that demonstrates safe actions with flex_8channel_1000", | ||
| "author": "Josh McVey", | ||
| } | ||
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| requirements = { | ||
| "robotType": "Flex", | ||
| "apiLevel": "2.20", | ||
| } | ||
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| def comment_tip_rack_status(ctx, tip_rack): | ||
| """ | ||
| Print out the tip status for each row in a tip rack. | ||
| Each row (A-H) will print the well statuses for columns 1-12 in a single comment, | ||
| with a '🟢' for present tips and a '❌' for missing tips. | ||
| """ | ||
| range_A_to_H = [chr(i) for i in range(ord("A"), ord("H") + 1)] | ||
| range_1_to_12 = range(1, 13) | ||
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| ctx.comment(f"Tip rack in {tip_rack.parent}") | ||
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| for row in range_A_to_H: | ||
| status_line = f"{row}: " | ||
| for col in range_1_to_12: | ||
| well = f"{row}{col}" | ||
| has_tip = tip_rack.wells_by_name()[well].has_tip | ||
| status_emoji = "🟢" if has_tip else "❌" | ||
| status_line += f"{well} {status_emoji} " | ||
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| # Print the full status line for the row | ||
| ctx.comment(status_line) | ||
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| def run(protocol): | ||
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| trash = protocol.load_trash_bin("A3") # must load trash bin | ||
| tip_rack = protocol.load_labware( | ||
| load_name="opentrons_flex_96_tiprack_1000ul", | ||
| label="Tip Rack", | ||
| location="A1", | ||
| ) | ||
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| pipette = protocol.load_instrument(instrument_name="flex_8channel_1000", mount="left", tip_racks=[tip_rack]) | ||
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| source_labware_C2 = protocol.load_labware( | ||
| load_name="nest_1_reservoir_290ml", | ||
| label="Source Reservoir", | ||
| location="C2", | ||
| ) | ||
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| destination_labware_D2 = protocol.load_labware( | ||
| load_name="nest_96_wellplate_100ul_pcr_full_skirt", | ||
| label="PCR Plate", | ||
| location="2", | ||
| ) | ||
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| volume = 100 | ||
| pipette.pick_up_tip() | ||
| comment_tip_rack_status(protocol, tip_rack) | ||
| pipette.aspirate(volume=volume, location=destination_labware_D2["H1"]) | ||
| pipette.dispense(volume=volume, location=destination_labware_D2["H2"]) | ||
| for i in range(1, 13): | ||
| protocol.comment(f"Touching tip to {destination_labware_D2[f'H{i}']}") | ||
| pipette.touch_tip(location=destination_labware_D2[f"H{i}"]) | ||
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| pipette.blow_out(location=destination_labware_D2["H1"]) | ||
| pipette.mix(repetitions=3, volume=volume, location=destination_labware_D2["H1"]) | ||
| pipette.drop_tip() | ||
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| range_A_to_H = [chr(i) for i in range(ord("A"), ord("H") + 1)] | ||
| column1 = [destination_labware_D2[f"{row}1"] for row in range_A_to_H] | ||
| column2 = [destination_labware_D2[f"{row}2"] for row in range_A_to_H] | ||
| column3 = [destination_labware_D2[f"{row}3"] for row in range_A_to_H] | ||
| column4 = [destination_labware_D2[f"{row}4"] for row in range_A_to_H] | ||
| column5 = [destination_labware_D2[f"{row}5"] for row in range_A_to_H] | ||
| column6 = [destination_labware_D2[f"{row}6"] for row in range_A_to_H] | ||
| column7 = [destination_labware_D2[f"{row}7"] for row in range_A_to_H] | ||
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| protocol.comment(f"Transferring {volume}uL from column 1 to column 2") | ||
| pipette.transfer(volume=volume, source=column1, dest=column2) | ||
| comment_tip_rack_status(protocol, tip_rack) | ||
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| volume = 50 | ||
| protocol.comment(f"Distribute {volume}uL from column 2 to column 3 and 4") | ||
| pipette.distribute(volume=volume, source=column2, dest=column3 + column4) | ||
| comment_tip_rack_status(protocol, tip_rack) | ||
| protocol.comment(f"Consolidate {volume}uL from column 5 and 6 to column 7") | ||
| pipette.consolidate(volume=volume, source=column5 + column6, dest=column7) | ||
| comment_tip_rack_status(protocol, tip_rack) |
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