JDBetteridge/spindle cache #606
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: CI | |
| # Trigger the workflow on push or pull request, | |
| # but only for the master branch | |
| on: | |
| push: | |
| branches: | |
| - master | |
| pull_request: | |
| branches: | |
| - master | |
| jobs: | |
| test: | |
| runs-on: ubuntu-latest | |
| strategy: | |
| # Don't immediately kill all if one Python version fails | |
| fail-fast: false | |
| matrix: | |
| python-version: ['3.9', '3.10', '3.11', '3.12'] | |
| env: | |
| CC: mpicc | |
| PETSC_DIR: ${{ github.workspace }}/petsc | |
| PETSC_ARCH: default | |
| PETSC_CONFIGURE_OPTIONS: --with-debugging=1 --with-shared-libraries=1 --with-c2html=0 --with-fortran-bindings=0 | |
| RDMAV_FORK_SAFE: 1 | |
| PYOP2_CI_TESTS: 1 | |
| timeout-minutes: 60 | |
| steps: | |
| - name: Setup tmate session | |
| uses: mxschmitt/action-tmate@v3 | |
| with: | |
| detached: true | |
| limit-access-to-actor: true | |
| timeout-minutes: 15 | |
| - name: Install system dependencies | |
| shell: bash | |
| run: | | |
| sudo apt update | |
| sudo apt install build-essential mpich libmpich-dev \ | |
| libblas-dev liblapack-dev gfortran | |
| - name: Set correct Python version | |
| uses: actions/setup-python@v2 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Clone PETSc | |
| uses: actions/checkout@v2 | |
| with: | |
| repository: firedrakeproject/petsc | |
| path: ${{ env.PETSC_DIR }} | |
| - name: Build and install PETSc | |
| shell: bash | |
| working-directory: ${{ env.PETSC_DIR }} | |
| run: | | |
| ./configure ${PETSC_CONFIGURE_OPTIONS} | |
| make | |
| - name: Build and install petsc4py | |
| shell: bash | |
| working-directory: ${{ env.PETSC_DIR }}/src/binding/petsc4py | |
| run: | | |
| python -m pip install --upgrade pip | |
| python -m pip install --upgrade wheel cython numpy | |
| python -m pip install --no-deps . | |
| - name: Checkout PyOP2 | |
| uses: actions/checkout@v2 | |
| with: | |
| path: PyOP2 | |
| - name: Install PyOP2 dependencies | |
| shell: bash | |
| working-directory: PyOP2 | |
| run: | | |
| # xargs is used to force installation of requirements in the order we specified. | |
| xargs -l1 python -m pip install < requirements-ext.txt | |
| xargs -l1 python -m pip install < requirements-git.txt | |
| python -m pip install pulp | |
| python -m pip install -U flake8 | |
| python -m pip install -U pytest-timeout | |
| - name: Install PyOP2 (Python <3.12) | |
| if: ${{ matrix.python-version != '3.12' }} | |
| shell: bash | |
| working-directory: PyOP2 | |
| run: python -m pip install . | |
| # Not sure if this is a bug in setuptools or something PyOP2 is doing wrong | |
| - name: Install PyOP2 (Python == 3.12) | |
| if: ${{ matrix.python-version == '3.12' }} | |
| shell: bash | |
| working-directory: PyOP2 | |
| run: | | |
| python -m pip install -U setuptools | |
| python setup.py install | |
| - name: Run linting | |
| shell: bash | |
| working-directory: PyOP2 | |
| run: make lint | |
| - name: Run tests | |
| shell: bash | |
| working-directory: PyOP2 | |
| run: | | |
| # Running parallel test cases separately works around a bug in pytest-mpi | |
| pytest -k "not parallel" --tb=native --timeout=480 --timeout-method=thread -o faulthandler_timeout=540 -v test | |
| mpiexec -n 3 pytest -k "parallel[3]" --tb=native --timeout=480 --timeout-method=thread -o faulthandler_timeout=540 -v test | |
| timeout-minutes: 10 | |
| - name: Build documentation | |
| if: ${{ matrix.python-version == '3.10' }} | |
| shell: bash | |
| working-directory: PyOP2 | |
| run: | | |
| python -m pip install sphinx | |
| make -C doc/sphinx html | |
| - name: Upload to github pages | |
| if: ${{ github.ref == 'refs/heads/master' && github.event_name == 'push' && matrix.python-version== '3.10' }} | |
| uses: crazy-max/[email protected] | |
| with: | |
| build_dir: PyOP2/doc/sphinx/build/html | |
| jekyll: false | |
| env: | |
| GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} |