NeurodataWithoutBorders · mavaylon1 · Jul 17, 2023 · Jul 17, 2023 · Jul 17, 2023 · Jul 17, 2023
diff --git a/docs/notebooks/NERD_TermSet_How_to_Guide.ipynb b/docs/notebooks/NERD_TermSet_How_to_Guide.ipynb
diff --git a/docs/notebooks/NERD_TermSet_Quickstart.ipynb b/docs/notebooks/NERD_TermSet_Quickstart.ipynb
diff --git a/docs/notebooks/er_img.png b/docs/notebooks/er_img.png
diff --git a/docs/notebooks/experimenter_term_set.yaml b/docs/notebooks/experimenter_term_set.yaml
@@ -0,0 +1,17 @@
+id: notebooks/species_example
+name: Experimenter
+prefixes:
+  ORCID: https://orcid.org/
+imports:
+  - linkml:types
+default_range: string
+
+enums:
+  Species:
+    permissible_values:
+      Dichter, Benjamin K.:
+        description: The ORCiD
+        meaning: ORCID:0000-0001-5725-6910
+      Rubel, Oliver:
+        description: The ORCiD
+        meaning: ORCID:0000-0001-9902-1984
diff --git a/docs/notebooks/experimenters_schema.png b/docs/notebooks/experimenters_schema.png
diff --git a/docs/notebooks/species_schema.png b/docs/notebooks/species_schema.png
diff --git a/docs/notebooks/species_term_set.yaml b/docs/notebooks/species_term_set.yaml
@@ -0,0 +1,24 @@
+id: noteeooks/species_example
+name: Species
+prefixes:
+  NCBI_TAXON: https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=
+  Ensemble: https://rest.ensembl.org/taxonomy/id/
+imports:
+  - linkml:types
+default_range: string
+
+enums:
+  Species:
+    permissible_values:
+      Homo sapiens:
+        description: Humans
+        meaning: NCBI_TAXON:9606
+      Mus musculus:
+        description: Mouse
+        meaning: Ensemble:10090
+      Ursus arctos horribilis:
+        description: Brown Bear
+        meaning: NCBI_TAXON:116960
+      Myrmecophaga tridactyla:
+        description: Ant Eater
+        meaning: NCBI_TAXON:71006
diff --git a/src/pynwb/file.py b/src/pynwb/file.py
@@ -8,7 +8,7 @@
 import pandas as pd
 
 from hdmf.common import DynamicTableRegion, DynamicTable
-from hdmf.container import ExternalResourcesManager
+from hdmf.container import HERDManager
 from hdmf.utils import docval, getargs, get_docval, popargs, popargs_to_dict, AllowPositional
 
 from . import register_class, CORE_NAMESPACE
@@ -150,7 +150,7 @@ def __init__(self, **kwargs):
 
 
 @register_class('NWBFile', CORE_NAMESPACE)
-class NWBFile(MultiContainerInterface, ExternalResourcesManager):
+class NWBFile(MultiContainerInterface, HERDManager):
     """
     A representation of an NWB file.
     """

diff --git a/src/pynwb/resources.py b/src/pynwb/resources.py
@@ -1,9 +1,9 @@
-from hdmf.common import ExternalResources as hdmf_ExternalResources
+from hdmf.common import HERD as hdmf_ExternalResources
 from . import get_type_map as tm
 from hdmf.utils import docval, get_docval
 
 
-class ExternalResources(hdmf_ExternalResources):
+class HERD(hdmf_ExternalResources):
     @docval(*get_docval(hdmf_ExternalResources.__init__))
     def __init__(self, **kwargs):
         kwargs['type_map'] = tm()

diff --git a/tests/unit/test_resources.py b/tests/unit/test_resources.py
@@ -1,4 +1,4 @@
-from pynwb.resources import ExternalResources
+from pynwb.resources import HERD
 from pynwb.testing import TestCase
 
 
@@ -7,5 +7,5 @@ def test_constructor(self):
         """
         Test constructor
         """
-        er = ExternalResources()
+        er = HERD()
         self.assertIsInstance(er, ExternalResources)