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Pin Zarr for tests #460

Merged
merged 4 commits into from
May 8, 2024
Merged

Pin Zarr for tests #460

merged 4 commits into from
May 8, 2024

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CodyCBakerPhD
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@CodyCBakerPhD CodyCBakerPhD commented May 8, 2024

Analog of catalystneuro/neuroconv#845 for here as well

Tests just failed today due to a surprise break from Zarr release yesterday - some issue with decoding Blosc

Shouldn't effect actual typical usage of the backend feature aside from Blosc I assume, since none of the other compressor tests complain

hdmf-dev/hdmf-zarr#192 so team knows about it, and if it's an issue with the way they specify the read from the IO level (I doubt it, but never know)

Downpinning in tests temporarily to fix the CI, will check over time if resolved automagically

@CodyCBakerPhD CodyCBakerPhD changed the title downpin zarr for tests Pin Zarr for tests May 8, 2024
@CodyCBakerPhD CodyCBakerPhD requested a review from rly May 8, 2024 17:29
@CodyCBakerPhD CodyCBakerPhD self-assigned this May 8, 2024
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rly commented May 8, 2024

@CodyCBakerPhD I fixed the tests so that zarr has an upper bound when the dandi extra is installed and pip install ".[dandi]" is used instead of pip install dandi. I'm not sure what's up with the pynwb 2.0 test failing. OK if that fails?

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I believe there was an old reason (so that joint installation requirements are not resolved simultaneously) but since that's working now OK to switch back

@CodyCBakerPhD CodyCBakerPhD enabled auto-merge (squash) May 8, 2024 21:15
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I'm not sure what's up with the pynwb 2.0 test failing. OK if that fails?

And sure, that's fine. Need to talk about it next LBNL meeting but most likely we'll stop supporting previous PyNWB versions with latest Inspector version

@CodyCBakerPhD CodyCBakerPhD merged commit 606aa8e into dev May 8, 2024
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@CodyCBakerPhD CodyCBakerPhD deleted the pin_zarr branch May 8, 2024 21:22
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2 participants