Fix bug when printing matrices with fewer than 20 characters

NakhlehLab · Jun 15, 2021 · 3129d89 · 3129d89
1 parent 689cbe9
commit 3129d89
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Showing 2 changed files with 7 additions and 2 deletions.
diff --git a/build.xml b/build.xml
@@ -94,7 +94,7 @@
 
     <target name="compile">
         <mkdir dir="${classes.dir}"/>
-        <javac srcdir="${src.dir}" destdir="${classes.dir}" classpathref="classpath" includeantruntime="false">
+        <javac srcdir="${src.dir}" destdir="${classes.dir}" classpathref="classpath" includeantruntime="false" debug="true">
             <patternset refid="excluded.source.files"/>
         </javac>
     </target>

diff --git a/src/edu/rice/cs/bioinfo/programs/phylonet/commands/MCMC_BiMarkers.java b/src/edu/rice/cs/bioinfo/programs/phylonet/commands/MCMC_BiMarkers.java
@@ -658,6 +658,7 @@ protected boolean checkParamsForCommand(){
 
     @Override
     protected String produceResult() {
+        final int matrixLength = _sequence.values().iterator().next().length();
 
         StringBuffer result = new StringBuffer("\n");
         System.out.println("\nOutput files under " + Utils._OUT_DIRECTORY);
@@ -677,7 +678,11 @@ else if (newseq.charAt(i) == '1')
                         newseq.setCharAt(i, '0');
                 }
                 _sequence.put(taxon, newseq.toString());
-                System.out.println(taxon + " " + _sequence.get(taxon).substring(0, 10) + "..." + _sequence.get(taxon).substring(_sequence.get(taxon).length() - 10, _sequence.get(taxon).length()));
+                if (matrixLength <= 20) {
+                    System.out.println(taxon + " " + _sequence.get(taxon));
+                } else {
+                    System.out.println(taxon + " " + _sequence.get(taxon).substring(0, 10) + "..." + _sequence.get(taxon).substring(matrixLength - 10));
+                }
             }
         }