Fix issues with recent versions of Dask and Numba #255
Workflow file for this run
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| name: Tests | |
| on: | |
| push: | |
| pull_request: | |
| jobs: | |
| build: | |
| env: | |
| DISPLAY: ":99.0" # arbitrary | |
| # GSETTINGS_SCHEMA_DIR_CONDA_BACKUP is somehow related to the following issue https://github.com/conda/conda/issues/9966 | |
| GSETTINGS_SCHEMA_DIR_CONDA_BACKUP: "/usr/share/miniconda/envs/testenv/share/glib-2.0/schemas" | |
| strategy: | |
| matrix: | |
| host-os: ["ubuntu-latest", "macos-latest", "windows-latest"] | |
| python-version: ["3.9", "3.10", "3.11"] | |
| numpy-version: ["1.26"] | |
| pyqt-version: ["5.15"] | |
| include: | |
| - host-os: "ubuntu-latest" | |
| conda-mamba: "mamba" | |
| - host-os: "macos-latest" | |
| conda-mamba: "mamba" | |
| - host-os: "windows-latest" | |
| conda-mamba: "mamba" | |
| fail-fast: false | |
| runs-on: ${{ matrix.host-os }} | |
| # Note: Services are based on docker containers and would run only on Linux | |
| # Leave the item here for reference. | |
| # services: | |
| # mongodb: | |
| # image: mongo | |
| # ports: | |
| # - 27017:27017 | |
| defaults: | |
| run: | |
| shell: bash -l {0} | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v2 | |
| with: | |
| # This step is not expected to influence the test, since the test is run in Conda environment | |
| python-version: 3.9 | |
| - uses: conda-incubator/setup-miniconda@v2 | |
| with: | |
| # miniforge-variant: Mambaforge | |
| miniforge-version: latest | |
| channels: conda-forge | |
| channel-priority: flexible | |
| auto-update-conda: true | |
| show-channel-urls: true | |
| allow-softlinks: true | |
| auto-activate-base: false | |
| activate-environment: testenv | |
| use-only-tar-bz2: false | |
| - name: Install Linux libraries | |
| if: runner.os == 'Linux' | |
| run: | | |
| sudo apt-get update | |
| sudo apt-get install -y xvfb herbstluftwm | |
| - name: Start 'xvfb' | |
| if: runner.os == 'Linux' | |
| run: | | |
| sudo /sbin/start-stop-daemon --start --pidfile /tmp/custom_xvfb_99.pid --make-pidfile --background --exec /usr/bin/Xvfb -- :99 -screen 0 1920x1200x24 -ac +extension GLX +render -noreset | |
| sleep 3 | |
| - name: Start 'herbstluftwm' | |
| if: runner.os == 'Linux' | |
| run: | | |
| herbstluftwm & | |
| sleep 1 | |
| - name: Install Conda packages | |
| run: | | |
| set -vxeo pipefail | |
| # conda install -y -n base --override-channels -c conda-forge mamba 'python_abi=*=*cp*' | |
| ${{ matrix.conda-mamba }} install -y \ | |
| python=${{ matrix.python-version }} \ | |
| numpy=${{ matrix.numpy-version }} \ | |
| pyqt=${{ matrix.pyqt-version }} \ | |
| numba \ | |
| pip \ | |
| 'scikit-beam>=0.0.24' \ | |
| -c conda-forge | |
| conda list | |
| pip list | |
| - name: Install Conda packages (Windows and OSX) | |
| if: runner.os != 'Linux' | |
| run: | | |
| set -vxeo pipefail | |
| # There are issues in building wheels for pystackreg>0.2.2 on OSX, so install pystackreg from CF | |
| ${{ matrix.conda-mamba }} install -y pystackreg -c conda-forge | |
| conda list | |
| pip list | |
| - name: Install PyPI packages | |
| run: | | |
| set -vxeuo pipefail | |
| ${{ matrix.conda-mamba }} install -y pystackreg -c conda-forge # Some issue with pystackreg from PyPI | |
| # pip install --upgrade pip setuptools | |
| pip install codecov | |
| pip install -r requirements.txt | |
| pip install -r requirements-dev.txt | |
| pip install . | |
| conda list | |
| pip list | |
| python --version | |
| - name: Test with pytest | |
| run: | | |
| set -vxeuo pipefail | |
| coverage run -m pytest -vvv | |
| coverage report |