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Fix parallel make builds #1446

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@rem1776 rem1776 commented Jan 19, 2024

Description
fixes for parallel make's with autotools (make -j). Also cleans up any targets pointing to include files since they aren't needed. draft for now since this will need to be updated for the diag_manager updates.

Fixes # (issue)

How Has This Been Tested?
make -j on the amd box.

Checklist:

  • My code follows the style guidelines of this project
  • I have performed a self-review of my own code
  • I have commented my code, particularly in hard-to-understand areas
  • I have made corresponding changes to the documentation
  • My changes generate no new warnings
  • Any dependent changes have been merged and published in downstream modules
  • New check tests, if applicable, are included
  • make distcheck passes

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