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Merge branch 'develop' into feature/abi_sea_ice
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guillaumevernieres authored Oct 1, 2024
2 parents 0c5fa5e + af67dc0 commit f703d0a
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Showing 51 changed files with 2,135 additions and 26 deletions.
2 changes: 1 addition & 1 deletion parm/io/fv3jedi_fieldmetadata_fv3inc.yaml
Original file line number Diff line number Diff line change
Expand Up @@ -24,6 +24,6 @@ field metadata:
- long name: air_pressure_thickness
io name: delp_inc

- long name: hydrostatic_layer_thickness
- long name: layer_thickness
io name: delz_inc

45 changes: 45 additions & 0 deletions parm/soca/obs/config/icec_amsu_mb_l2.yaml
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obs space:
name: icec_amsu_mb_l2
obsdatain:
engine:
type: H5File
obsfile: !ENV ${DATA}/obs/${OPREFIX}icec_amsu_mb_l2.${PDY}${cyc}.nc4
obsdataout:
engine:
type: H5File
obsfile: !ENV ${DATA}/diags/icec_amsu_mb_l2.${PDY}${cyc}.nc4
simulated variables: [seaIceFraction]
io pool:
max pool size: 1
get values:
time interpolation: linear
obs operator:
name: Identity
observation alias file: obsop_name_map.yaml
obs error:
covariance model: diagonal
obs filters:
- filter: Domain Check
where:
- variable: {name: GeoVaLs/sea_area_fraction}
minvalue: 0.9
- filter: Bounds Check
minvalue: 0.0
maxvalue: 1.0
#- filter: Background Check
# threshold: 5.0
- filter: Domain Check
where:
- variable: { name: GeoVaLs/sea_surface_temperature}
maxvalue: 2.0
- filter: Domain Check
where:
- variable: { name: GeoVaLs/sea_surface_temperature}
maxvalue: 0.0
action:
name: inflate error
inflation factor: 2.0
- filter: Domain Check
where:
- variable: {name: GeoVaLs/distance_from_coast}
minvalue: 100e3
45 changes: 45 additions & 0 deletions parm/soca/obs/config/icec_atms_n20_l2.yaml
Original file line number Diff line number Diff line change
@@ -0,0 +1,45 @@
obs space:
name: icec_atms_n20_l2
obsdatain:
engine:
type: H5File
obsfile: !ENV ${DATA}/obs/${OPREFIX}icec_atms_n20_l2.{PDY}${cyc}.nc4
obsdataout:
engine:
type: H5File
obsfile: !ENV ${DATA}/diags/icec_atms_n20_l2.${PDY}${cyc}.nc4
simulated variables: [seaIceFraction]
io pool:
max pool size: 1
get values:
time interpolation: linear
obs operator:
name: Identity
observation alias file: obsop_name_map.yaml
obs error:
covariance model: diagonal
obs filters:
- filter: Domain Check
where:
- variable: {name: GeoVaLs/sea_area_fraction}
minvalue: 0.9
- filter: Bounds Check
minvalue: 0.0
maxvalue: 1.0
#- filter: Background Check
# threshold: 5.0
- filter: Domain Check
where:
- variable: { name: GeoVaLs/sea_surface_temperature}
maxvalue: 2.0
- filter: Domain Check
where:
- variable: { name: GeoVaLs/sea_surface_temperature}
maxvalue: 0.0
action:
name: inflate error
inflation factor: 2.0
- filter: Domain Check
where:
- variable: {name: GeoVaLs/distance_from_coast}
minvalue: 100e3
45 changes: 45 additions & 0 deletions parm/soca/obs/config/icec_atms_n21_l2.yaml
Original file line number Diff line number Diff line change
@@ -0,0 +1,45 @@
obs space:
name: icec_atms_n21_l2
obsdatain:
engine:
type: H5File
obsfile: !ENV ${DATA}/obs/${OPREFIX}icec_atms_n21_l2.{PDY}${cyc}.nc4
obsdataout:
engine:
type: H5File
obsfile: !ENV ${DATA}/diags/icec_atms_n21_l2.${PDY}${cyc}.nc4
simulated variables: [seaIceFraction]
io pool:
max pool size: 1
get values:
time interpolation: linear
obs operator:
name: Identity
observation alias file: obsop_name_map.yaml
obs error:
covariance model: diagonal
obs filters:
- filter: Domain Check
where:
- variable: {name: GeoVaLs/sea_area_fraction}
minvalue: 0.9
- filter: Bounds Check
minvalue: 0.0
maxvalue: 1.0
#- filter: Background Check
# threshold: 5.0
- filter: Domain Check
where:
- variable: { name: GeoVaLs/sea_surface_temperature}
maxvalue: 2.0
- filter: Domain Check
where:
- variable: { name: GeoVaLs/sea_surface_temperature}
maxvalue: 0.0
action:
name: inflate error
inflation factor: 2.0
- filter: Domain Check
where:
- variable: {name: GeoVaLs/distance_from_coast}
minvalue: 100e3
45 changes: 45 additions & 0 deletions parm/soca/obs/config/icec_atms_npp_l2.yaml
Original file line number Diff line number Diff line change
@@ -0,0 +1,45 @@
obs space:
name: icec_atms_npp_l2
obsdatain:
engine:
type: H5File
obsfile: !ENV ${DATA}/obs/${OPREFIX}icec_atms_npp_l2.{PDY}${cyc}.nc4
obsdataout:
engine:
type: H5File
obsfile: !ENV ${DATA}/diags/icec_atms_npp_l2.${PDY}${cyc}.nc4
simulated variables: [seaIceFraction]
io pool:
max pool size: 1
get values:
time interpolation: linear
obs operator:
name: Identity
observation alias file: obsop_name_map.yaml
obs error:
covariance model: diagonal
obs filters:
- filter: Domain Check
where:
- variable: {name: GeoVaLs/sea_area_fraction}
minvalue: 0.9
- filter: Bounds Check
minvalue: 0.0
maxvalue: 1.0
#- filter: Background Check
# threshold: 5.0
- filter: Domain Check
where:
- variable: { name: GeoVaLs/sea_surface_temperature}
maxvalue: 2.0
- filter: Domain Check
where:
- variable: { name: GeoVaLs/sea_surface_temperature}
maxvalue: 0.0
action:
name: inflate error
inflation factor: 2.0
- filter: Domain Check
where:
- variable: {name: GeoVaLs/distance_from_coast}
minvalue: 100e3
45 changes: 45 additions & 0 deletions parm/soca/obs/config/icec_gmi_gpm_l2.yaml
Original file line number Diff line number Diff line change
@@ -0,0 +1,45 @@
obs space:
name: icec_gmi_gpm_l2
obsdatain:
engine:
type: H5File
obsfile: !ENV ${DATA}/obs/${OPREFIX}icec_gmi_gpm_l2.${PDY}${cyc}.nc4
obsdataout:
engine:
type: H5File
obsfile: !ENV ${DATA}/diags/icec_gmi_gpm_l2.${PDY}${cyc}.nc4
simulated variables: [seaIceFraction]
io pool:
max pool size: 1
get values:
time interpolation: linear
obs operator:
name: Identity
observation alias file: obsop_name_map.yaml
obs error:
covariance model: diagonal
obs filters:
- filter: Domain Check
where:
- variable: {name: GeoVaLs/sea_area_fraction}
minvalue: 0.9
- filter: Bounds Check
minvalue: 0.0
maxvalue: 1.0
#- filter: Background Check
# threshold: 5.0
- filter: Domain Check
where:
- variable: { name: GeoVaLs/sea_surface_temperature}
maxvalue: 2.0
- filter: Domain Check
where:
- variable: { name: GeoVaLs/sea_surface_temperature}
maxvalue: 0.0
action:
name: inflate error
inflation factor: 2.0
- filter: Domain Check
where:
- variable: {name: GeoVaLs/distance_from_coast}
minvalue: 100e3
45 changes: 45 additions & 0 deletions parm/soca/obs/config/icec_ssmis_f17_l2.yaml
Original file line number Diff line number Diff line change
@@ -0,0 +1,45 @@
obs space:
name: icec_ssmis_f17_l2
obsdatain:
engine:
type: H5File
obsfile: !ENV ${DATA}/obs/${OPREFIX}icec_ssmis_f17_l2.${PDY}${cyc}.nc4
obsdataout:
engine:
type: H5File
obsfile: !ENV ${DATA}/diags/icec_ssmis_f17_l2.${PDY}${cyc}.nc4
simulated variables: [seaIceFraction]
io pool:
max pool size: 1
get values:
time interpolation: linear
obs operator:
name: Identity
observation alias file: obsop_name_map.yaml
obs error:
covariance model: diagonal
obs filters:
- filter: Domain Check
where:
- variable: {name: GeoVaLs/sea_area_fraction}
minvalue: 0.9
- filter: Bounds Check
minvalue: 0.0
maxvalue: 1.0
#- filter: Background Check
# threshold: 5.0
- filter: Domain Check
where:
- variable: { name: GeoVaLs/sea_surface_temperature}
maxvalue: 2.0
- filter: Domain Check
where:
- variable: { name: GeoVaLs/sea_surface_temperature}
maxvalue: 0.0
action:
name: inflate error
inflation factor: 2.0
- filter: Domain Check
where:
- variable: {name: GeoVaLs/distance_from_coast}
minvalue: 100e3
45 changes: 45 additions & 0 deletions parm/soca/obs/config/icec_viirs_n20_l2_north.yaml
Original file line number Diff line number Diff line change
@@ -0,0 +1,45 @@
obs space:
name: icec_viirs_n20_l2_north
obsdatain:
engine:
type: H5File
obsfile: !ENV ${DATA}/obs/${OPREFIX}icec_viirs_n20_l2_north.{PDY}${cyc}.nc4
obsdataout:
engine:
type: H5File
obsfile: !ENV ${DATA}/diags/icec_viirs_n20_l2_north.${PDY}${cyc}.nc4
simulated variables: [seaIceFraction]
io pool:
max pool size: 1
get values:
time interpolation: linear
obs operator:
name: Identity
observation alias file: obsop_name_map.yaml
obs error:
covariance model: diagonal
obs filters:
- filter: Domain Check
where:
- variable: {name: GeoVaLs/sea_area_fraction}
minvalue: 0.9
- filter: Bounds Check
minvalue: 0.0
maxvalue: 1.0
#- filter: Background Check
# threshold: 5.0
- filter: Domain Check
where:
- variable: { name: GeoVaLs/sea_surface_temperature}
maxvalue: 2.0
- filter: Domain Check
where:
- variable: { name: GeoVaLs/sea_surface_temperature}
maxvalue: 0.0
action:
name: inflate error
inflation factor: 2.0
- filter: Domain Check
where:
- variable: {name: GeoVaLs/distance_from_coast}
minvalue: 100e3
45 changes: 45 additions & 0 deletions parm/soca/obs/config/icec_viirs_n20_l2_south.yaml
Original file line number Diff line number Diff line change
@@ -0,0 +1,45 @@
obs space:
name: icec_viirs_n20_l2_south
obsdatain:
engine:
type: H5File
obsfile: !ENV ${DATA}/obs/${OPREFIX}icec_viirs_n20_l2_south.{PDY}${cyc}.nc4
obsdataout:
engine:
type: H5File
obsfile: !ENV ${DATA}/diags/icec_viirs_n20_l2_south.${PDY}${cyc}.nc4
simulated variables: [seaIceFraction]
io pool:
max pool size: 1
get values:
time interpolation: linear
obs operator:
name: Identity
observation alias file: obsop_name_map.yaml
obs error:
covariance model: diagonal
obs filters:
- filter: Domain Check
where:
- variable: {name: GeoVaLs/sea_area_fraction}
minvalue: 0.9
- filter: Bounds Check
minvalue: 0.0
maxvalue: 1.0
#- filter: Background Check
# threshold: 5.0
- filter: Domain Check
where:
- variable: { name: GeoVaLs/sea_surface_temperature}
maxvalue: 2.0
- filter: Domain Check
where:
- variable: { name: GeoVaLs/sea_surface_temperature}
maxvalue: 0.0
action:
name: inflate error
inflation factor: 2.0
- filter: Domain Check
where:
- variable: {name: GeoVaLs/distance_from_coast}
minvalue: 100e3
8 changes: 8 additions & 0 deletions parm/soca/obs/obs_list.yaml
Original file line number Diff line number Diff line change
Expand Up @@ -15,6 +15,14 @@ observers:
# Ice concentration
- !INC ${MARINE_OBS_YAML_DIR}/icec_amsr2_north.yaml
- !INC ${MARINE_OBS_YAML_DIR}/icec_amsr2_south.yaml
#- !INC ${MARINE_OBS_YAML_DIR}/icec_viirs_n20_l2_north.yaml
#- !INC ${MARINE_OBS_YAML_DIR}/icec_viirs_n20_l2_south.yaml
#- !INC ${MARINE_OBS_YAML_DIR}/icec_amsu_mb_l2.yaml
#- !INC ${MARINE_OBS_YAML_DIR}/icec_atms_n20_l2.yaml
#- !INC ${MARINE_OBS_YAML_DIR}/icec_atms_n21_l2.yaml
#- !INC ${MARINE_OBS_YAML_DIR}/icec_atms_npp_l2.yaml
#- !INC ${MARINE_OBS_YAML_DIR}/icec_gmi_gpm_l2.yaml
#- !INC ${MARINE_OBS_YAML_DIR}/icec_ssmis_f17_l2.yaml

# in situ: monthly
#- !INC ${MARINE_OBS_YAML_DIR}/insitu_profile_bathy.yaml
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