Molepro docs (#85)

* Create molecular-data.md

* Update molecular-data.md

Information from the  wiki athttps://github.com/NCATSTranslator/Translator-All/wiki/Molecular-Data-Provider

* Update molecular-data.md

Fixed linkout to MolePro Github

docs/architecture/kp/molecular-data.md

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+[**Back to Home**](https://github.com/NCATSTranslator/NCATSTranslator.github.io/wiki)
+
+# Molecular Data Provider (KP)
+
+## General Description
+The Molecular Data Provider, known as MolePro, is part of the NCATS Biomedical Data Translator project. MolePro integrates diverse chemical biology data sources and provides a curated framework for chemical entities, enhancing our understanding of their effects on biological targets.
+
+Key features of MolePro include:
+
+1. **Data Integration**: MolePro consolidates information from various public chemical biology datasets, portals, and tools to offer comprehensive insights into compounds and their protein targets. This includes similarity-based connections.
+
+2. **Unbiased Approach**: We adhere to a stringent policy to avoid expert bias, ensuring true innovation. Our process involves impartial data scouting, efficient architecture building, and meticulous data provenance capturing.
+
+3. **Unified Framework**: The result is a cohesive framework for compounds and targets, facilitating the identification of new compounds or targets through "guilt-by-association" inferences from large datasets.
+
+4. **Chemical Biology Expertise**: MolePro contributes to the Translator project with expertise with probes in drug-discovery, toxicity flagging, and small-molecule mechanism of action elucidation.
+
+MolePro harnesses powerful and diverse datasets to support research and development in chemical biology, ultimately aiming to deepen our understanding and application of chemical entities in biomedical science.
+
+## Team Contact:
+
+[email protected]
+
+Vlado Dancik ([@vdancik](https://github.com/vdancik))
+
+# Interfaces
+MolePro was designed to provide the same molecular data knowledge in a choice of two APIs to cater to various user preferences: the MolePro API and the TRAPI.
+
+### MolePro API
+We have made MolePro's knowledge graph accessible to the scientific community through the MolePro API hosted on two servers:
+* NCATS Translator server: https://molepro.transltr.io/molecular_data_provider/api
+* Broad Institute server: https://translator.broadinstitute.org/molecular_data_provider/api
+
+### Translator Reasoner API
+
+MolePro can communicate biomedical questions and answers using the standardized Translator Reasoner API (TRAPI). Adhering to the TRAPI standard, MolePro integrates the query graph, knowledge graph, and results into a single HTTP message. Consequently, MolePro's knowledge graph is accessible to the scientific community through the TRAPI hosted on two servers:
+* NCATS Translator server: https://molepro-trapi.transltr.io/molepro/trapi/v1.5/ui/
+* Broad Institute server: https://translator.broadinstitute.org/molepro/trapi/v1.5/ui/
+
+# Knowledge Sources
+MolePro's knowledge graph is constructed through extensive data scouting and careful data wrangling, integrating information from over two dozen discovered knowledge sources, including:
+* _BiGG Models_ http://bigg.ucsd.edu/
+* _BigGIM_	http://biggim.ncats.io/api/
+* _BindingDB_	https://www.bindingdb.org/
+* _ChEBI_	https://www.ebi.ac.uk/chebi
+* _ChemBank_	http://chembank.broadinstitute.org/
+* _ChEMBL_ https://www.ebi.ac.uk/chembl/
+* _CMAP_	https://clue.io/
+* _CTD_         http://ctdbase.org/
+* _CTRP_	http://portals.broadinstitute.org/ctrp/
+* _DepMap_	https://depmap.org/portal/
+* _DGIdb_	http://dgidb.org/	
+* _DrugBank_	https://www.drugbank.ca/	
+* _DrugCentral_	http://drugcentral.org/privacy	
+* _Drug Repurposing Hub_	https://clue.io/repurposing
+* _DSSTox_      https://www.epa.gov/comptox-tools/distributed-structure-searchable-toxicity-dsstox-database
+* _Gelinea_     https://github.com/broadinstitute/GeLiNEA
+* _GtoPdb_	https://www.guidetopharmacology.org/
+* _HGNC_        https://www.genenames.org	
+* _HMDB_	https://www.hmdb.ca/	
+* _Inxight:Drugs_	https://drugs.ncats.io/
+* _Kinomescan_  https://lincs.hms.harvard.edu/kinomescan/
+* _MSigDB_	https://www.gsea-msigdb.org/gsea/msigdb/index.jsp
+* _PharmGKB_	https://www.pharmgkb.org/ 
+* _Pharos_      https://pharos.nih.gov
+* _ProbeMiner_  https://probeminer.icr.ac.uk/#/   
+* _PubChem_ https://pubchem.ncbi.nlm.nih.gov/
+* _Reactome_    https://reactome.org/
+* _RxNorm_	https://www.nlm.nih.gov/research/umls/rxnorm/index.html	
+* _SIDER_	http://sideeffects.embl.de/
+* _STITCH_	http://stitch.embl.de	
+* _STRING_	https://string-db.org/		
+
+
+For additional details about ingested data source see [Catalog of MolePro knowledge sources](https://translator.broadinstitute.org/molecular_data_provider/transformers) (JSON formatted output).
+
+# Source Code
+
+[MolePro GitHub](https://github.com/broadinstitute/molecular-data-provider)
+
+# External Documentation
+
+[Additional MolePro documentation in GitHub](https://github.com/broadinstitute/molecular-data-provider)
+