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Merge pull request #494 from scrasmussen/bugfix/dockerfile-build
bugfix: dockerfile build and CI error reporting
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Submodule physics
updated
1 files
| +1 −0 | physics/Interstitials/UFS_SCM_NEPTUNE/GFS_phys_time_vary.scm.F90 |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -1,27 +1,33 @@ | ||
| FROM debian:12 | ||
| MAINTAINER Michael Kavulich <[email protected]> | ||
| LABEL maintainer="Michael Kavulich <[email protected]>" | ||
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| # Set up base OS environment | ||
| # arguments that can be passed in | ||
| ARG PR_NUMBER | ||
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| # Set up base OS environment | ||
| RUN apt-get -y update | ||
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| # Get "essential" tools and libraries | ||
| RUN apt-get -y install build-essential \ | ||
| && apt-get -y install cmake curl git file gfortran-12 ksh m4 python3 tcsh time wget vim \ | ||
| && apt-get -y install cmake cmake-curses-gui curl git file gfortran-12 ksh m4 python3 tcsh time wget vim emacs-nox \ | ||
| && apt-get -y install libnetcdf-pnetcdf-19 libnetcdff7 libnetcdf-dev libnetcdff-dev libxml2 \ | ||
| && apt-get -y install python3-pip python3.11-venv | ||
| && apt-get -y install python3-pip python3.11-venv python3-netcdf4 \ | ||
| && apt-get -y install openmpi-bin libopenmpi-dev | ||
| RUN ln -s /usr/bin/python3 /usr/bin/python | ||
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| MAINTAINER Grant Firl <[email protected]> or Michael Kavulich <[email protected]> | ||
| # Set up python needed packages, preferred Docker method is apt-get but | ||
| # f90nml can't be installed for debian that way | ||
| RUN pip install f90nml --break-system-packages | ||
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| #Compiler environment variables | ||
| ENV CC /usr/bin/gcc | ||
| ENV FC /usr/bin/gfortran | ||
| ENV CXX /usr/bin/g++ | ||
| ENV F77 /usr/bin/gfortran | ||
| ENV F90 /usr/bin/gfortran | ||
| ENV CC=/usr/bin/gcc | ||
| ENV FC=/usr/bin/gfortran | ||
| ENV CXX=/usr/bin/g++ | ||
| ENV F77=/usr/bin/gfortran | ||
| ENV F90=/usr/bin/gfortran | ||
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| # Other necessary environment variables | ||
| ENV LD_LIBRARY_PATH /usr/lib/ | ||
| ENV LD_LIBRARY_PATH=/usr/lib/ | ||
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| # Set up unpriviledged user account, set up user home space and make sure user has permissions on all stuff in /comsoftware | ||
| RUN groupadd comusers -g 9999 \ | ||
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@@ -32,57 +38,63 @@ RUN groupadd comusers -g 9999 \ | |
| && chown -R comuser:comusers /comsoftware \ | ||
| && chmod -R 6755 /comsoftware | ||
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| # Link version-specific aliases (python3 will be created later with virtual environment) | ||
| RUN ln -s ~comuser/.venv/bin/python3 /usr/local/bin/python | ||
| RUN ln -s /usr/bin/gfortran-12 /usr/bin/gfortran | ||
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| # all root steps completed above, now continue below as regular userID comuser | ||
| USER comuser | ||
| WORKDIR /home | ||
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| # Build NCEP libraries we need for SCM | ||
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| ENV NCEPLIBS_DIR /comsoftware/nceplibs | ||
| ENV NCEPLIBS_DIR=/comsoftware/nceplibs | ||
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| RUN mkdir -p $NCEPLIBS_DIR/src && cd $NCEPLIBS_DIR/src \ | ||
| && git clone -b v2.4.1 --recursive https://github.com/NOAA-EMC/NCEPLIBS-bacio \ | ||
| && mkdir NCEPLIBS-bacio/build && cd NCEPLIBS-bacio/build \ | ||
| && cmake -DCMAKE_INSTALL_PREFIX=$NCEPLIBS_DIR .. \ | ||
| && make VERBOSE=1 \ | ||
| && make install | ||
| && make VERBOSE=1 -j \ | ||
| && make install | ||
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| RUN cd $NCEPLIBS_DIR/src \ | ||
| && git clone -b v2.3.3 --recursive https://github.com/NOAA-EMC/NCEPLIBS-sp \ | ||
| && mkdir NCEPLIBS-sp/build && cd NCEPLIBS-sp/build \ | ||
| && cmake -DCMAKE_INSTALL_PREFIX=$NCEPLIBS_DIR .. \ | ||
| && make VERBOSE=1 \ | ||
| && make VERBOSE=1 -j \ | ||
| && make install | ||
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| RUN cd $NCEPLIBS_DIR/src \ | ||
| && git clone -b v2.11.0 --recursive https://github.com/NOAA-EMC/NCEPLIBS-w3emc \ | ||
| && mkdir NCEPLIBS-w3emc/build && cd NCEPLIBS-w3emc/build \ | ||
| && cmake -DCMAKE_INSTALL_PREFIX=$NCEPLIBS_DIR .. \ | ||
| && make VERBOSE=1 \ | ||
| && make VERBOSE=1 -j \ | ||
| && make install | ||
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| ENV bacio_ROOT /comsoftware/nceplibs | ||
| ENV sp_ROOT /comsoftware/nceplibs | ||
| ENV w3emc_ROOT /comsoftware/nceplibs | ||
| ENV bacio_ROOT=/comsoftware/nceplibs | ||
| ENV sp_ROOT=/comsoftware/nceplibs | ||
| ENV w3emc_ROOT=/comsoftware/nceplibs | ||
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| # Obtain CCPP SCM source code, build code, and download static data | ||
| RUN if [ -z "$PR_NUMBER" ]; then \ | ||
| cd /comsoftware \ | ||
| && git clone --recursive -b main https://github.com/NCAR/ccpp-scm; \ | ||
| else \ | ||
| cd /comsoftware \ | ||
| && git clone https://github.com/NCAR/ccpp-scm \ | ||
| && cd ccpp-scm \ | ||
| && git fetch origin pull/${PR_NUMBER}/head:test_pr \ | ||
| && git checkout test_pr \ | ||
| && git submodule update --init --recursive; \ | ||
| fi | ||
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| RUN mkdir /comsoftware/ccpp-scm/scm/bin \ | ||
| && cd /comsoftware/ccpp-scm/scm/bin \ | ||
| && cmake ../src \ | ||
| && make -j | ||
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| # Obtain CCPP SCM source code and static data, build code | ||
| RUN cd /comsoftware \ | ||
| && git clone --recursive -b main https://github.com/NCAR/ccpp-scm \ | ||
| && cd /comsoftware/ccpp-scm/ \ | ||
| RUN cd /comsoftware/ccpp-scm/ \ | ||
| && ./contrib/get_all_static_data.sh \ | ||
| && ./contrib/get_thompson_tables.sh \ | ||
| && cd /comsoftware/ccpp-scm/scm \ | ||
| && mkdir bin \ | ||
| && cd bin \ | ||
| && cmake ../src \ | ||
| && make -j4 | ||
| && ./contrib/get_thompson_tables.sh | ||
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| # The analysis scripts have options for using LaTeX when making figure labels. | ||
| # If you would like to install LaTeK, uncomment the section below. | ||
| # If you would like to install LaTeK, uncomment the section below. | ||
| # Note: This will increase the image size by 1 GB. | ||
| #USER root | ||
| #RUN yum -y update \ | ||
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@@ -96,9 +108,3 @@ ENV SCM_ROOT=/comsoftware/ccpp-scm/ | |
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| # For interactive use, vim mouse settings are infuriating | ||
| RUN echo "set mouse=" > ~/.vimrc | ||
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| # Set up python virtual environment and install needed packages | ||
| ENV VIRTUAL_ENV=~/.venv | ||
| RUN python3 -m venv $VIRTUAL_ENV | ||
| ENV PATH="$VIRTUAL_ENV/bin:$PATH" | ||
| RUN pip3 install f90nml==1.4.4 netcdf4==1.6.5 | ||
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