Merge pull request #505 from grantfirl/20240819_combiner

Combination for 498, 499, 501

.github/workflows/ci_run_scm_ufs_replay.yml

@@ -40,8 +40,8 @@ jobs:
     - name: Setup python.
       uses: conda-incubator/setup-miniconda@v3
       with:
-        activate-environment: env_ufsreplay
-        environment-file: environment-ufsreplay.yml
+        activate-environment: env_ufscasegen
+        environment-file: environment-ufscasegen.yml
         use-only-tar-bz2: true
         auto-activate-base: true
         auto-update-conda: true

environment-ufsreplay.yml → environment-ufscasegen.yml

@@ -1,4 +1,4 @@
-name: env_ufsreplay
+name: env_ufscasegen
 
 dependencies:
   - conda-forge::python=3.8.5

scm/doc/TechGuide/acknow.rst

@@ -8,5 +8,5 @@ For referencing this document please use:
 
       Firl, G., D. Swales, L. Carson, L. Bernardet, D. Heinzeller, M. Harrold, T. Hertneky, and
       M. Kavulich, 2024. Common Community Physics Package Single Column Model v7.0.0 User and
-      Technical Guide. Available at https://ccpp-scm.readthedocs.io/en/latest/.
+      Technical Guide. Available at https://ccpp-scm.readthedocs.io/en/v7.0.0/.
 

scm/doc/TechGuide/chap_ccpp.rst

@@ -3,8 +3,8 @@
 CCPP Interface
 ==============
 
-Chapter 6 of the CCPP v6 Technical Documentation
-(https://ccpp-techdoc.readthedocs.io/en/v6.0.0/) provides a wealth of
+Chapter 6 of the CCPP v7 Technical Documentation
+(https://ccpp-techdoc.readthedocs.io/en/v7.0.0/) provides a wealth of
 information on the overall process of connecting a host model to the
 CCPP framework for calling physics. This chapter describes the
 particular implementation within this SCM, including how to set up,
@@ -23,7 +23,7 @@ Preparing data from the SCM
 ~~~~~~~~~~~~~~~~~~~~~~~~~~~
 
 As described in sections 6.1 and 6.2 of the `CCPP Technical
-Documentation <https://ccpp-techdoc.readthedocs.io/en/v6.0.0/>`__ a host
+Documentation <https://ccpp-techdoc.readthedocs.io/en/v7.0.0/>`__ a host
 model must allocate memory and provide metadata for variables that are
 passed into and out of the schemes within the physics suite. As of this
 release, in practice this means that a host model must do this for all
@@ -33,7 +33,7 @@ schemes are allocated and documented in the file ``ccpp-scm/scm/src/scm_type_def
 within the ``physics`` derived data type. This derived data type initializes its
 component variables in a ``create`` type-bound procedure. As mentioned in section
 6.2 of the `CCPP Technical
-Documentation <https://ccpp-techdoc.readthedocs.io/en/v6.0.0/>`__, files
+Documentation <https://ccpp-techdoc.readthedocs.io/en/v7.0.0/>`__, files
 containing all required metadata was constructed for describing all
 variables in the derived data type. These files are ``scm/src/GFS_typedefs.meta,``, ``scm/src/CCPP_typedefs.meta``, and ``scm_physical_constants.meta``. Further, ``scm_type_defs.meta``
 exists to provide metadata for derived data type definitions and their
@@ -47,7 +47,7 @@ Editing and running ``ccpp_prebuild.py``
 
 General instructions for configuring and running the ``ccpp_prebuild.py`` script can be found
 in chapter 8 of the `CCPP Technical
-Documentation <https://ccpp-techdoc.readthedocs.io/en/v6.0.0/>`__. The
+Documentation <https://ccpp-techdoc.readthedocs.io/en/v7.0.0/>`__. The
 script expects to be run with a host-model-dependent configuration file,
 passed as argument ``–config=path_to_config_file``. Within this configuration file are variables that
 hold paths to the variable definition files (where metadata tables can
@@ -98,7 +98,7 @@ described in sections
 respectively. A more general description of the process for performing
 suite initialization and running can also be found in sections 6.4 and
 6.5 of the `CCPP Technical
-Documentation <https://ccpp-techdoc.readthedocs.io/en/v6.0.0/>`__.
+Documentation <https://ccpp-techdoc.readthedocs.io/en/v7.0.0/>`__.
 
 Changing a suite
 ----------------
@@ -110,7 +110,7 @@ Prior to being able to swap a scheme within a suite, one must first add
 a CCPP-compliant scheme to the pool of available schemes in the CCPP
 physics repository. This process is described in chapter 2 of the `CCPP
 Technical
-Documentation <https://ccpp-techdoc.readthedocs.io/en/v6.0.0/>`__.
+Documentation <https://ccpp-techdoc.readthedocs.io/en/v7.0.0/>`__.
 
 Once a CCPP-compliant scheme has been added to the CCPP physics
 repository, the process for modifying an existing suite should take the
@@ -129,7 +129,7 @@ following steps into account:
    -  Do any of the new variables need to be calculated in an
       interstitial scheme? If so, one must be written and made
       CCPP-compliant itself. The `CCPP Technical
-      Documentation <https://ccpp-techdoc.readthedocs.io/en/v6.0.0/>`__
+      Documentation <https://ccpp-techdoc.readthedocs.io/en/v7.0.0/>`__
       will help in this endeavor, and the process outlined in its
       chapter 2 should be followed.
 
@@ -157,7 +157,7 @@ following steps into account:
    associated interstitial ``<scheme>`` elements and simply replacing the scheme
    names to reflect their replacements. See chapter 4 of the `CCPP
    Technical
-   Documentation <https://ccpp-techdoc.readthedocs.io/en/v6.0.0/>`__ for
+   Documentation <https://ccpp-techdoc.readthedocs.io/en/v7.0.0/>`__ for
    further details.
 
 Modifying “groups” of parameterizations
@@ -236,7 +236,7 @@ would do so:
    cannot be used in a physics scheme yet. For that, you’ll need to add
    an entry in the corresponding metadata file. See section 2.2 of the
    `CCPP Technical
-   Documentation <https://ccpp-techdoc.readthedocs.io/en/v6.0.0/CompliantPhysicsParams.html#metadata-table-rules>`__
+   Documentation <https://ccpp-techdoc.readthedocs.io/en/v7.0.0/CompliantPhysicsParams.html#metadata-table-rules>`__
    for more information regarding the format.
 
 #. On the physics scheme side, there will also be a metadata file entry

scm/doc/TechGuide/chap_function.rst

@@ -34,7 +34,7 @@ The following steps are performed at the beginning of program execution:
    sets some variables within the ``scm_state`` derived type from the data that was
    read.
 
-#. Call ``get_case_init()`` (or ``get_case_init_DEPHY()`` if using the DEPHY format) in the ``scm_input`` module to read in the
+#. Call ``get_case_init_DEPHY()`` in the ``scm_input`` module to read in the
    case input data file (see :numref:`Section %s <case input>`). This subroutine
    also sets some variables within the ``scm_input`` derived type from the data that
    was read.

scm/doc/TechGuide/chap_intro.rst

@@ -15,10 +15,10 @@ parameterizations (CCPP framework). In fact, this SCM serves as perhaps the simp
 example for using the CCPP and its framework in an atmospheric model.
 This version contains all parameterizations of NOAA’s evolved
 operational GFS v16 suite (implemented in 2021), plus additional
-developmental schemes. The schemes are grouped in six supported suites
+developmental schemes. The schemes are grouped in five supported suites
 described in detail in the `CCPP Scientific
-Documentation <https://dtcenter.ucar.edu/GMTB/v6.0.0/sci_doc/>`__
-(GFS_v16, GFS_v17p8, RAP, HRRR, and RRFS_v1beta, and WoFS_v0).
+Documentation <https://dtcenter.ucar.edu/GMTB/v7.0.0/sci_doc/>`__
+(GFS_v16, GFS_v16_RRTMGP, GFS_v17_p8_ugwpv1, HRRR_gf, and WoFS_v0).
 
 This document serves as both the User and Technical Guides for this
 model. It contains a Quick Start Guide with instructions for obtaining
@@ -35,39 +35,37 @@ through the CCPP infrastructure.
 Version Notes
 -------------
 
-The CCPP SCM v6.0.0 contains the following major and minor changes since
-v5.0.
+The CCPP SCM v7.0.0 contains the following major and minor changes since v6.0.
 
 Major
 
--  Inclusion of regression testing functionality
+-  Ability to generate SCM cases from UFS simulations using either derived forcings
+   or native forcings from the dynamical core.
 
--  Combine single- and multi-run capabilities into one script
+-  Support for single precision physics within the SCM.
 
 Minor
 
--  Add RUC LSM support
+-  Addition of new physics schemes; RRTMGP radiation and CLM Lake Model, along with
+   updates to existing schemes.
 
--  Add the GFS_v17p8, HRRR, RRFS_v1beta, and WoFS_v0 suites
+-  CCPP SCM support for the latest operational/research physics configurations used
+   across UFS applications, including the GFS_v17_p8_ugwpv1, GFS_v16_RRTMGP, and
+   HRRR_gf suites.
 
--  Update the vertical coordinate code to better match latest FV3
-   vertical coordinate code
+-  New SCM cases; MOSAiC-AMPS, MOSAiC-SS, COMBLE, and a catolog of cases in the
+   `GdR-DEPHY <https://github.com/GdR-DEPHY/DEPHY-SCM>`__ repository that can be run
+   with CCPP SCM.
 
--  Simplify the case configuration namelists
-
--  Add greater flexibility for output location (outside of bin
-   directory)
+-  Updated `Scientific Documentation <https://dtcenter.ucar.edu/GMTB/v7.0.0/sci_doc/>`__, User's Guide, Technical Documentation, and
+   online tutorials.
 
 Limitations
 ~~~~~~~~~~~
 
 This release bundle has some known limitations:
 
--  In the output file, temperature tendency variables all mistakenly
-   have the same description, although their variable names are correct.
-   This has been fixed in the development code.
-
--  Using the RRFS_v1beta, HRRR, and WoFS_v0 suites for cases where deep
+-  Using the HRRR_gf and WoFS_v0 suites for cases where deep
    convection is expected to be active will likely produce
    strange/unreliable results, unless the forcing has been modified to
    account for the deep convection. This is because forcing for existing
@@ -101,16 +99,12 @@ This release bundle has some known limitations:
       LSMs for the supplied cases over land points, there should be no
       technical reason why they cannot be used with LSMs, however.
 
--  As of this release, using the SCM over a land point with an LSM is
+-  Using the SCM over a land point with an LSM is
    possible through the use of UFS initial conditions (see 
-   :numref:`Section %s <UFSreplay>`). However, advective forcing terms
-   are unavailable as of this release, so only short integrations using
-   this configuration should be employed. Using dynamical tendencies
-   (advective forcing terms) from the UFS will be part of a future
-   release.
+   :numref:`Section %s <UFScasegen>`).
 
 -  There are several capabilities of the developmental code that have
    not been tested sufficiently to be considered part of the supported
-   release. Those include additional parameterizations. Users that want
-   to use experimental capabilities should refer to 
-   :numref:`Subsection %s <development_code>`.
+   release. Those include additional parameterizations and the CCPP
+   Suite Simulator. Users that want to use experimental capabilities
+   should refer to :numref:`Subsection %s <development_code>`.