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Merge pull request #21 from dufengtong/main
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adding interactive notebook
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carsen-stringer authored Aug 28, 2023
2 parents 4db2640 + 919fa7d commit f8bf263
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Expand Up @@ -22,8 +22,10 @@ Rastermap runs in python 3.8+ and has a graphical user interface (GUI) for runni
* [rastermap_singleneurons.ipynb](notebooks/rastermap_singleneurons.ipynb) [![Open In Colab](https://colab.research.google.com/assets/colab-badge.svg)](https://colab.research.google.com/github/MouseLand/rastermap/blob/main/notebooks/rastermap_singleneurons.ipynb) shows how to use it with small to medium sized data (< 200 neurons), in this case recorded from rat hippocampus
* [rastermap_zebrafish.ipynb](notebooks/rastermap_zebrafish.ipynb) [![Open In Colab](https://colab.research.google.com/assets/colab-badge.svg)](https://colab.research.google.com/github/MouseLand/rastermap/blob/main/notebooks/rastermap_zebrafish.ipynb) shows how to use it with large-scale data from zebrafish
* [rastermap_widefield.ipynb](notebooks/rastermap_widefield.ipynb) [![Open In Colab](https://colab.research.google.com/assets/colab-badge.svg)](https://colab.research.google.com/github/MouseLand/rastermap/blob/main/notebooks/rastermap_widefield.ipynb) shows how to use it with widefield imaging data, or other types of datasets that are too large to fit into memory
* [rastermap_interactive.ipynb](notebooks/rastermap_interactive.ipynb) [![Open In Colab](https://colab.research.google.com/assets/colab-badge.svg)](https://colab.research.google.com/github/MouseLand/rastermap/blob/main/notebooks/rastermap_interactive.ipynb) allows running Rastermap in an interactive way without a local installation
* [tutorial.ipynb](notebooks/tutorial.ipynb) [![Open In Colab](https://colab.research.google.com/assets/colab-badge.svg)](https://colab.research.google.com/github/MouseLand/rastermap/blob/main/notebooks/tutorial.ipynb) is a guided tutorial for integrating rastermap and facemap to visualize behavioral representations


All demo data available [here](https://osf.io/xn4cm/).

Here is what the output looks like for a segment of a mesoscope recording in a mouse during spontaneous activity (3.2Hz sampling rate), compared to random neural sorting:
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