Adaptation to blueprint + Update to Python 3.10

.copier-answers.yml

@@ -0,0 +1,17 @@
+# Changes here will be overwritten by Copier; NEVER EDIT MANUALLY
+_commit: cc8b3de
+_src_path: [email protected]:MeteoSwiss-APN/mch-python-blueprint.git
+email: [email protected]
+full_name: Stefan Ruedisuehli
+github_username: MeteoSwiss-APN
+module_name: pyflexplot
+project_doc_url: https://github.io/MeteoSwiss-APN/pyflexplot
+project_github: https://github.com/MeteoSwiss-APN/pyflexplot
+project_keywords: Dispersion, Flexpart, COSMO, mapping, visualization
+project_name: PyFlexPlot
+project_short_description: Stefan Ruedisuehli's PyFlexPlot
+project_slug: pyflexplot
+project_ssh_url: git+ssh://[email protected]/MeteoSwiss-APN/pyflexplot.git
+python_version: '3.10'
+version: 1.0.10
+year: '2023'

.github/workflows/pre-commit.yml

@@ -0,0 +1,40 @@
+name: Run pre-commit in blueprint
+
+on:
+  push:
+    branches:
+    - main
+  pull_request:
+    branches:
+    - main
+
+jobs:
+  blueprint-pre-commit:
+    runs-on: ubuntu-latest
+    defaults:
+      run:
+        shell: bash -l {0}
+    steps:
+    - uses: actions/checkout@v2
+    - name: Set up Python
+      uses: actions/setup-python@v2
+      with:
+        python-version: 3.11.0
+    - uses: conda-incubator/setup-miniconda@v2
+      with:
+        miniconda-version: "latest"
+        channels: conda-forge
+        channel-priority: flexible
+        show-channel-urls: true
+    - name: Create env from unpinned reqs
+      run: |
+        conda env create --name dev_env --file requirements/requirements.yml
+    - name: Install project into env
+      run: |
+        conda run --name dev_env pip install --no-deps .
+    - name: Install pre-commit hooks
+      run: |
+        conda run --name dev_env pre-commit install-hooks
+    - name: Run pre-commit hooks
+      run: |
+        conda run --name dev_env pre-commit run --all-files

.gitignore

@@ -1,15 +1,3 @@
-# Local files
-local/
-
-# Default test data link
-data
-
-# Non-permanent data, e.g. test output
-scratch/
-
-# Batch processing log files
-log/
-
 # Byte-compiled / optimized / DLL files
 __pycache__/
 *.py[cod]
@@ -58,7 +46,6 @@ nosetests.xml
 coverage.xml
 *.cover
 .hypothesis/
-junit-*.xml
 .pytest_cache/
 
 # Translations
@@ -85,6 +72,9 @@ target/
 # Jupyter Notebook
 .ipynb_checkpoints
 
+# pyenv
+.python-version
+
 # celery beat schedule file
 celerybeat-schedule
 
@@ -96,6 +86,7 @@ celerybeat-schedule
 
 # virtualenv
 .venv
+.venvs
 venv/
 venvs/
 venv_*/
@@ -112,6 +103,8 @@ venv_*/
 
 # mypy
 .mypy_cache/
+
+# Eclipse
 .project
 
 # VS Code

.pre-commit-config.yaml

@@ -11,18 +11,91 @@ repos:
     -   id: debug-statements
     -   id: end-of-file-fixer
     -   id: trailing-whitespace
--   repo: https://github.com/psf/black
-    rev: 23.1.0
+-   repo: local
+    hooks:
+    -   id: forbidden-files-copier-rej
+        name: find copier rejection files
+        language: fail
+        entry: "Found copier update rejection file(s): review and remove them"
+        files: "\\.rej$"
+    -   id: forbidden-files-git-orig
+        name: find git merge backup files
+        language: fail
+        entry: "Found git merge backup file(s): review and remove them"
+        files: "\\.orig$"
+-   repo: local
+    hooks:
+    -   id: rstcheck
+        name: rstcheck
+        description: Check REST files for correctness
+        language: system
+        entry: rstcheck
+        types: [rst]
+-   repo: local
+    hooks:
+    -   id: codespell
+        name: codespell
+        description: Check for spelling errors
+        language: system
+        entry: codespell
+-   repo: local
     hooks:
     -   id: black
-        files: ^(.*\.py|(src|tests|docs)/(.*/)*.*\.py)$
--   repo: https://github.com/timothycrosley/isort
-    rev: 5.12.0
+        name: black
+        description: Format Python code
+        language: system
+        entry: black
+        types_or: [python, pyi]
+-   repo: local
     hooks:
     -   id: isort
-        files: ^(.*\.py|(src|tests|docs)/(.*/)*.*\.py)$
--   repo: https://github.com/PyCQA/pydocstyle
-    rev: 6.3.0
+        name: isort
+        description: Group and sort Python imports
+        language: system
+        entry: isort
+        types_or: [python, pyi, cython]
+-   repo: local
     hooks:
     -   id: pydocstyle
-        files: ^src/(.*/)*.*\.py$
+        name: pydocstyle
+        description: Check docstrings in Python code for compliance with conventions
+        language: system
+        entry: pydocstyle
+        types: [python]
+        files: ^src/
+# SR It would be handy to abort if one linter fails b/c the same error often
+# SR triggers multiple linters. That way, if flake8 fails, pylint and mypy
+# SR (which in large code bases can take some time to run) could be skipped
+# SR before fixing the error. Unfortunately, pre-commit only provides the global
+# SR option fail_fast, which would abort even after the small fixers and
+# SR formatters changed something. A potential solution could be to write a
+# SR small bash script run-linters.sh that runs flake8, pylint and run-mypy.sh
+# SR in that order and aborts on error.
+#-   repo: local
+#    hooks:
+#    -   id: pylint
+#        name: pylint
+#        description: Check Python code for correctness, consistency and adherence to best practices
+#        language: system
+#        entry: pylint
+#        types: [python]
+-   repo: local
+    hooks:
+    -   id: flake8
+        name: flake8
+        description: Check Python code for correctness, consistency and adherence to best practices
+        language: system
+        entry: flake8
+        types: [python]
+-   repo: local
+    hooks:
+    -   id: mypy
+        name: mypy
+        description: Perform static type analysis of Python code
+        language: system
+        entry: bash tools/run-mypy.sh
+        require_serial: true
+        pass_filenames: false
+        verbose: true
+        types: [python]
+        files: ^(src|tests)/

AUTHORS.md

@@ -0,0 +1,9 @@
+# Credits
+
+## Development Lead
+
+- Stefan Ruedisuehli <[email protected]>
+
+## Contributors
+
+None yet. Why not be the first?