Merge PR #37 'framework/KNLreproducible' into develop

added -align array64byte flag to optimized Intel builds to fix
reproducibility issues on some machines (KNL)
also replaced deprecated -FR flag with -free to denote free-form source

B4B
Tested on Cori, Edison at NERSC

Replaces previous PR in MPAS-Dev/MPAS
MPAS-Dev/MPAS#1520
though see discussion therein.

Fixes previously reported bug in MPAS-Dev/MPAS
MPAS-Dev/MPAS#1519

Makefile

@@ -144,11 +144,11 @@ ifort:
 	"CC_SERIAL = icc" \
 	"CXX_SERIAL = icpc" \
 	"FFLAGS_PROMOTION = -real-size 64" \
-	"FFLAGS_OPT = -O3 -convert big_endian -FR" \
+	"FFLAGS_OPT = -O3 -convert big_endian -free -align array64byte" \
 	"CFLAGS_OPT = -O3" \
 	"CXXFLAGS_OPT = -O3" \
 	"LDFLAGS_OPT = -O3" \
-	"FFLAGS_DEBUG = -g -convert big_endian -FR -CU -CB -check all -fpe0 -traceback" \
+	"FFLAGS_DEBUG = -g -convert big_endian -free -CU -CB -check all -fpe0 -traceback" \
 	"CFLAGS_DEBUG = -g -traceback" \
 	"CXXFLAGS_DEBUG = -g -traceback" \
 	"LDFLAGS_DEBUG = -g -fpe0 -traceback" \
@@ -169,11 +169,11 @@ ifort-scorep:
 	"CC_SERIAL = icc" \
 	"CXX_SERIAL = icpc" \
 	"FFLAGS_PROMOTION = -real-size 64" \
-	"FFLAGS_OPT = -O3 -g -convert big_endian -FR" \
+	"FFLAGS_OPT = -O3 -g -convert big_endian -free -align array64byte" \
 	"CFLAGS_OPT = -O3 -g" \
 	"CXXFLAGS_OPT = -O3 -g" \
 	"LDFLAGS_OPT = -O3 -g" \
-	"FFLAGS_DEBUG = -g -convert big_endian -FR -CU -CB -check all -fpe0 -traceback" \
+	"FFLAGS_DEBUG = -g -convert big_endian -free -CU -CB -check all -fpe0 -traceback" \
 	"CFLAGS_DEBUG = -g -traceback" \
 	"CXXFLAGS_DEBUG = -g -traceback" \
 	"LDFLAGS_DEBUG = -g -fpe0 -traceback" \
@@ -194,11 +194,11 @@ ifort-gcc:
 	"CC_SERIAL = gcc" \
 	"CXX_SERIAL = g++" \
 	"FFLAGS_PROMOTION = -real-size 64" \
-	"FFLAGS_OPT = -O3 -convert big_endian -FR" \
+	"FFLAGS_OPT = -O3 -convert big_endian -free -align array64byte" \
 	"CFLAGS_OPT = -O3" \
 	"CXXFLAGS_OPT = -O3" \
 	"LDFLAGS_OPT = -O3" \
-	"FFLAGS_DEBUG = -g -convert big_endian -FR -CU -CB -check all -fpe0 -traceback" \
+	"FFLAGS_DEBUG = -g -convert big_endian -free -CU -CB -check all -fpe0 -traceback" \
 	"CFLAGS_DEBUG = -g" \
 	"CXXFLAGS_DEBUG = -g" \
 	"LDFLAGS_DEBUG = -g -fpe0 -traceback" \
@@ -355,13 +355,13 @@ intel-nersc:
 	"CC_SERIAL = cc" \
 	"CXX_SERIAL = CC" \
 	"FFLAGS_PROMOTION = -real-size 64" \
-	"FFLAGS_OPT = -O3 -convert big_endian -FR" \
+	"FFLAGS_OPT = -O3 -convert big_endian -free -align array64byte" \
 	"CFLAGS_OPT = -O3" \
 	"CXXFLAGS_OPT = -O3" \
 	"LDFLAGS_OPT = -O3" \
 	"FFLAGS_OMP = -qopenmp" \
 	"CFLAGS_OMP = -qopenmp" \
-	"FFLAGS_DEBUG = -real-size 64 -g -convert big_endian -FR -CU -CB -check all -gen-interfaces -warn interfaces -traceback" \
+	"FFLAGS_DEBUG = -real-size 64 -g -convert big_endian -free -CU -CB -check all -gen-interfaces -warn interfaces -traceback" \
 	"CFLAGS_DEBUG = -g -traceback" \
 	"CXXFLAGS_DEBUG = -g -traceback" \
 	"LDFLAGS_DEBUG = -g -traceback" \