big oops

.github/workflows/deploy.yaml

@@ -16,7 +16,7 @@ jobs:
     permissions:
       id-token: write
     if: |
-      github.repository == 'MDAnalysis/hole2-mdakit' &&
+      github.repository == 'MDAnalysis/mdahole2' &&
       (github.event_name == 'push' && startsWith(github.ref, 'refs/tags/'))
     name: Build, upload and test pure Python wheels to TestPyPi
     runs-on: ubuntu-latest
@@ -38,7 +38,7 @@ jobs:
     permissions:
       id-token: write
     if: |
-      github.repository == 'MDAnalysis/hole2-mdakit' &&
+      github.repository == 'MDAnalysis/mdahole2' &&
       (github.event_name == 'release' && github.event.action == 'published')
     name: Build, upload and test pure Python wheels to PyPi
     runs-on: ubuntu-latest

.github/workflows/docs.yaml

@@ -17,7 +17,7 @@ defaults:
 
 jobs:
   docs:
-    if: "github.repository == 'MDAnalysis/hole2-mdakit'"
+    if: "github.repository == 'MDAnalysis/mdahole2'"
     runs-on: ubuntu-latest
 
     steps:

.github/workflows/gh-ci.yaml

@@ -36,7 +36,7 @@ jobs:
           last-n-minor-release: 1
 
   main-tests:
-    if: "github.repository == 'MDAnalysis/hole2-mdakit'"
+    if: "github.repository == 'MDAnalysis/mdahole2'"
     runs-on: ${{ matrix.os }}
     strategy:
         fail-fast: false
@@ -113,7 +113,7 @@ jobs:
 
 
   pylint_check:
-    if: "github.repository == 'MDAnalysis/hole2-mdakit'"
+    if: "github.repository == 'MDAnalysis/mdahole2'"
     needs: environment-config
     runs-on: ubuntu-latest
 
@@ -139,7 +139,7 @@ jobs:
 
 
   pypi_check:
-    if: "github.repository == 'MDAnalysis/hole2-mdakit'"
+    if: "github.repository == 'MDAnalysis/mdahole2'"
     needs: environment-config
     runs-on: ubuntu-latest
 

AUTHORS.md

@@ -4,7 +4,7 @@ mdahole2 was created by Ian Kenney in 2022.
 
 
 All contributing authors are listed in this file below.
-The repository history at https://github.com/MDAnalysis/hole2-mdakit
+The repository history at https://github.com/MDAnalysis/mdahole2
 and the CHANGELOG show individual code contributions.
 
 ## Chronological list of authors

CHANGELOG.md

@@ -69,14 +69,14 @@ in the AUTHORS.md file.
 - IAlibay
 
 ### Added
-- the core functionality of hole2-mdakit (and its tests) was implemented
+- the core functionality of mdahole2 (and its tests) was implemented
   using the source code from MDAnalysis.analysis.hole2 (PR #1)
 - GitHub actions CI workflow (PR #2 #3 #7)
 - added historical authors from original source to AUTHORS.md (PR #4)
 - documentation deployed to github pages (PR #11)
 
 ## Changed
 
-[Unreleased]: https://github.com/MDAnalysis/hole2-mdakit/compare/0.3.0...HEAD
-[0.3.0]: https://github.com/MDAnalysis/hole2-mdakit/compare/0.2.0...0.3.0
-[0.2.0]: https://github.com/MDAnalysis/hole2-mdakit/releases/tag/0.2.0
+[Unreleased]: https://github.com/MDAnalysis/mdahole2/compare/0.3.0...HEAD
+[0.3.0]: https://github.com/MDAnalysis/mdahole2/compare/0.2.0...0.3.0
+[0.2.0]: https://github.com/MDAnalysis/mdahole2/releases/tag/0.2.0

CONTRIBUTING.md

@@ -5,13 +5,13 @@ We welcome all contributions to mdahole2!
 Contributions can take many forms, such as:
 
 * sharing bug reports or feature requests through the [Issue Tracker](https://github.com/MDAnalysis/
-hole2-mdakit/issues)
+mdahole2/issues)
 * asking or answering questions, or otherwise joining in on discussions
 * adding bug fixes, new features, or otherwise improving the code
 * adding or improving documentation
 
 The second two options both involve making a [pull request](https://github.com/MDAnalysis/
-hole2-mdakit/pulls) .
+mdahole2/pulls) .
 
 There are many existing guides on how to make a contribution to an open
 source project on GitHub. In short, the steps are to:

README.md

@@ -2,14 +2,14 @@ mdahole2
 ==============================
 [//]: # (Badges)
 
-| **Latest release** | [![Last release tag](https://img.shields.io/github/release-pre/MDAnalysis/hole2-mdakit.svg)](https://github.com/MDAnalysis/hole2-mdakit/releases) ![GitHub commits since latest release (by date) for a branch](https://img.shields.io/github/commits-since/MDAnalysis/hole2-mdakit/latest)  [![Documentation status](https://github.com/MDAnalysis/hole2-mdakit/actions/workflows/docs.yaml/badge.svg?branch=main)](https://github.com/MDAnalysis/hole2-mdakit/actions/workflows/docs.yaml)|
+| **Latest release** | [![Last release tag](https://img.shields.io/github/release-pre/MDAnalysis/mdahole2.svg)](https://github.com/MDAnalysis/mdahole2/releases) ![GitHub commits since latest release (by date) for a branch](https://img.shields.io/github/commits-since/MDAnalysis/mdahole2/latest)  [![Documentation status](https://github.com/MDAnalysis/mdahole2/actions/workflows/docs.yaml/badge.svg?branch=main)](https://github.com/MDAnalysis/mdahole2/actions/workflows/docs.yaml)|
 | :------ | :------- |
-| **Status** | [![GH Actions Status](https://github.com/MDAnalysis/hole2-mdakit/actions/workflows/gh-ci.yaml/badge.svg)](https://github.com/MDAnalysis/hole2-mdakit/actions?query=branch%3Amain+workflow%3Agh-ci) [![codecov](https://codecov.io/gh/MDAnalysis/hole2-mdakit/branch/main/graph/badge.svg)](https://codecov.io/gh/MDAnalysis/hole2-mdakit/branch/main)|
+| **Status** | [![GH Actions Status](https://github.com/MDAnalysis/mdahole2/actions/workflows/gh-ci.yaml/badge.svg)](https://github.com/MDAnalysis/mdahole2/actions?query=branch%3Amain+workflow%3Agh-ci) [![codecov](https://codecov.io/gh/MDAnalysis/mdahole2/branch/main/graph/badge.svg)](https://codecov.io/gh/MDAnalysis/mdahole2/branch/main)|
 | **Community** | [![License: GPL v3](https://img.shields.io/badge/License-GPLv3-blue.svg)](https://www.gnu.org/licenses/gpl-3.0)  [![Powered by MDAnalysis](https://img.shields.io/badge/powered%20by-MDAnalysis-orange.svg?logoWidth=16&logo=data:image/x-icon;base64,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)](https://www.mdanalysis.org)|
 
 A Python interface for the HOLE suite tools to analyze an ion channel pore or transporter pathway as a function of time or arbitrary order parameters.
 
-mdahole2 is bound by a [Code of Conduct](https://github.com/MDAnalysis/hole2-mdakit/blob/main/CODE_OF_CONDUCT.md).
+mdahole2 is bound by a [Code of Conduct](https://github.com/MDAnalysis/mdahole2/blob/main/CODE_OF_CONDUCT.md).
 
 ### Installation
 
@@ -74,8 +74,8 @@ pip install -e ".[test,doc]"
 
 ### Copyright
 
-The mdahole2 source code is hosted at https://github.com/MDAnalysis/hole2-mdakit
-and is available under the GNU General Public License, version 3 (see the file [LICENSE](https://github.com/MDAnalysis/hole2-mdakit/blob/main/LICENSE)).
+The mdahole2 source code is hosted at https://github.com/MDAnalysis/mdahole2
+and is available under the GNU General Public License, version 3 (see the file [LICENSE](https://github.com/MDAnalysis/mdahole2/blob/main/LICENSE)).
 
 Copyright (c) 2022, The MDAnalysis Development Team and all contributors
                     listed in the file AUTHORS

docs/source/getting_started.rst

@@ -9,7 +9,7 @@ Documentation
 
 Documentation is hosted on `GitHub Pages`_.
 
-.. _`GitHub Pages`: https://www.mdanalysis.org/hole2-mdakit/
+.. _`GitHub Pages`: https://www.mdanalysis.org/mdahole2/
 
 Download source code
 ~~~~~~~~~~~~~~~~~~~~
@@ -18,15 +18,15 @@ The ``mdahole2`` source code is hosted on GitHub_ and can be downloaded with
 
 .. code:: bash
 
-	git clone [email protected]:MDAnalysis/hole2-mdakit.git
+	git clone [email protected]:MDAnalysis/mdahole2.git
 
 with an SSH key, or with
 
 .. code:: bash
 
-	git clone https://github.com/MDAnalysis/hole2-mdakit.git
+	git clone https://github.com/MDAnalysis/mdahole2.git
 
-.. _GitHub: https://github.com/MDAnalysis/hole2-mdakit
+.. _GitHub: https://github.com/MDAnalysis/mdahole2
 
 Build and installation
 ~~~~~~~~~~~~~~~~~~~~~~

pyproject.toml

@@ -56,8 +56,8 @@ doc = [
 ]
 
 [project.urls]
-source = "https://github.com/MDAnalysis/hole2-mdakit"
-documentation = "https://www.mdanalysis.org/hole2-mdakit/"
+source = "https://github.com/MDAnalysis/mdahole2"
+documentation = "https://www.mdanalysis.org/mdahole2/"
 
 [tool.setuptools.packages]
 find = {namespaces = false, include=["mdahole2"], exclude=["devtools", "docs"]}