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Update update_documentation.yml
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LeoHeidweiler committed Jul 14, 2024
1 parent cc5bcad commit c1b4d55
Showing 1 changed file with 5 additions and 7 deletions.
12 changes: 5 additions & 7 deletions .github/workflows/update_documentation.yml
Original file line number Diff line number Diff line change
Expand Up @@ -31,20 +31,18 @@ jobs:
python -m pip install --upgrade pip
pip install poetry
poetry install # Ensure all dependencies are installed
- name: Debug
run: |
echo $PATH
which jupyter
- name: Verify pyyaml installation
run: |
poetry run python -c "import yaml; print('pyyaml installed successfully')"
- name: Install R dependencies and IRkernel
- name: Install IRkernel
run: |
poetry run pip install jupyter
pip install jupyter
R -e 'install.packages(c("renv", "IRkernel"))'
R -e 'IRkernel::installspec(user = FALSE)'
- name: Install R dependencies
R -e "renv::restore()"

- name: Run Makefile
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