Update update_documentation.yml #18

	name: Deploy Documentation

	on:
	push:
	branches:
	- develop # Triggers the workflow on pushes to the develop branch

	jobs:
	build-and-deploy:
	runs-on: ubuntu-latest

	steps:
	- name: Checkout repository
	uses: actions/checkout@v2

	- name: Set up Python
	uses: actions/setup-python@v2
	with:
	python-version: '3.10.12' # Use Python 3.10.12

	- name: Set up R
	uses: r-lib/actions/setup-r@v2

	- name: Install system dependencies
	run: \|
	sudo apt-get update
	sudo apt-get install -y libcurl4-openssl-dev libssl-dev libharfbuzz-dev libfribidi-dev libfreetype6-dev

	- name: Install Python dependencies
	run: \|
	python -m pip install --upgrade pip
	pip install poetry
	poetry install # Ensure all dependencies are installed

	- name: Verify pyyaml installation
	run: \|
	poetry run python -c "import yaml; print('pyyaml installed successfully')"

	- name: Install R dependencies
	run: \|
	R -e "install.packages('renv')"
	R -e "renv::restore()"

	- name: Run Makefile
	run: make

	- name: Install mkdocs and mike
	run: \|
	python -m pip install mkdocs
	python -m pip install mike

	- name: Deploy documentation to GitHub Pages
	run: \|
	mike set-default develop
	mike deploy develop -p

	- name: Configure Git
	run: \|
	git config --global user.name 'github-actions'
	git config --global user.email '[email protected]'

	- name: Push changes to gh-pages
	run: \|
	git add .
	git commit -m "Update documentation"
	git push origin gh-pages
	env:
	GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}

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