update compat and workflows

.github/workflows/CompatHelper.yml

@@ -15,7 +15,7 @@ jobs:
         run: which julia
         continue-on-error: true
       - name: Install Julia, but only if it is not already available in the PATH
-        uses: julia-actions/setup-julia@v1
+        uses: julia-actions/setup-julia@v2
         with:
           version: '1'
           arch: ${{ runner.arch }}

.github/workflows/docs.yml

@@ -11,8 +11,8 @@ jobs:
     name: Documentation
     runs-on: macOS-latest
     steps:
-      - uses: actions/checkout@v2
-      - uses: julia-actions/setup-julia@v1
+      - uses: actions/checkout@v4
+      - uses: julia-actions/setup-julia@v2
         with:
           version: "1"
       - run: julia --project=docs -e '

.github/workflows/linux.yml

@@ -17,8 +17,8 @@ jobs:
         arch:
           - x64
     steps:
-      - uses: actions/checkout@v2
-      - uses: julia-actions/setup-julia@v1
+      - uses: actions/checkout@v4
+      - uses: julia-actions/setup-julia@v2
         with:
           version: ${{ matrix.version }}
           arch: ${{ matrix.arch }}

.github/workflows/linux_nightly.yml

@@ -17,8 +17,8 @@ jobs:
         arch:
           - x64
     steps:
-      - uses: actions/checkout@v2
-      - uses: julia-actions/setup-julia@v1
+      - uses: actions/checkout@v4
+      - uses: julia-actions/setup-julia@v2
         with:
           version: ${{ matrix.version }}
           arch: ${{ matrix.arch }}

.github/workflows/mac.yml

@@ -17,8 +17,8 @@ jobs:
         arch:
           - x64
     steps:
-      - uses: actions/checkout@v2
-      - uses: julia-actions/setup-julia@v1
+      - uses: actions/checkout@v4
+      - uses: julia-actions/setup-julia@v2
         with:
           version: ${{ matrix.version }}
           arch: ${{ matrix.arch }}

.github/workflows/mac_nightly.yml

@@ -17,8 +17,8 @@ jobs:
         arch:
           - x64
     steps:
-      - uses: actions/checkout@v2
-      - uses: julia-actions/setup-julia@v1
+      - uses: actions/checkout@v4
+      - uses: julia-actions/setup-julia@v2
         with:
           version: ${{ matrix.version }}
           arch: ${{ matrix.arch }}

.github/workflows/windows.yml

@@ -17,8 +17,8 @@ jobs:
         arch:
           - x64
     steps:
-      - uses: actions/checkout@v2
-      - uses: julia-actions/setup-julia@v1
+      - uses: actions/checkout@v4
+      - uses: julia-actions/setup-julia@v2
         with:
           version: ${{ matrix.version }}
           arch: ${{ matrix.arch }}

.github/workflows/windows_nightly.yml

@@ -17,8 +17,8 @@ jobs:
         arch:
           - x64
     steps:
-      - uses: actions/checkout@v2
-      - uses: julia-actions/setup-julia@v1
+      - uses: actions/checkout@v4
+      - uses: julia-actions/setup-julia@v2
         with:
           version: ${{ matrix.version }}
           arch: ${{ matrix.arch }}

.gitignore

@@ -6,3 +6,4 @@ docs/build/
 docs/src/tutorials/
 docs/src/howtos/
 docs/src/notebooks/
+settings.json

Project.toml

@@ -1,7 +1,7 @@
 name = "AIBECS"
 uuid = "ace601d6-714c-11e9-04e5-89b7fad23838"
 authors = ["Benoit Pasquier <[email protected]>"]
-version = "0.13.2"
+version = "0.13.3"
 
 [deps]
 Bijectors = "76274a88-744f-5084-9051-94815aaf08c4"
@@ -36,30 +36,32 @@ UnPack = "3a884ed6-31ef-47d7-9d2a-63182c4928ed"
 Unitful = "1986cc42-f94f-5a68-af5c-568840ba703d"
 
 [compat]
-Bijectors = "0.8, 0.9, 0.10"
+Bijectors = "0.13"
 CodecZlib = "0.7"
 DataDeps = "0.7"
-DataFrames = "0.20, 0.21, 0.22, 1.0"
-Distances = "0.9, 0.10"
-Distributions = "0.23, 0.24, 0.25"
+DataFrames = "1"
+Distances = "0.10"
+Distributions = "0.25"
 FieldMetadata = "0.3"
-Flatten = "0.3, 0.4"
+Flatten = "0.4"
 ForwardDiff = "0.10"
-ImageFiltering = "0.6, 0.7"
-Interpolations = "0.12, 0.13, 0.14"
+ImageFiltering = "0.7"
+Interpolations = "0.15"
 JLD2 = "0.4"
 MAT = "0.10"
 MetadataArrays = "0.1"
-NCDatasets = "0.10, 0.11, 0.12"
+NCDatasets = "0.14"
 NearestNeighbors = "0.4"
 OceanGrids = "0.4"
 RecipesBase = "1"
-Reexport = "0.2, 1.0"
-SciMLBase = "1"
-Shapefile = "0.6, 0.7, 0.8"
-StringDistances = "0.10, 0.11"
+Reexport = "1"
+SciMLBase = "2"
+Shapefile = "0.13"
+StringDistances = "0.11"
 UnPack = "1"
 Unitful = "1"
+Downloads = "1"
+SparseArrays = "1"
 julia = "1"
 
 [extras]

docs/Project.toml

@@ -7,4 +7,4 @@ Plots = "91a5bcdd-55d7-5caf-9e0b-520d859cae80"
 Unitful = "1986cc42-f94f-5a68-af5c-568840ba703d"
 
 [compat]
-Documenter = "0.27"
+Documenter = "1"

src/Parameters.jl

@@ -437,7 +437,7 @@ Note that the instance of your parameters type `T` is required here because
 it contains information on non-optimizable parameters and priors of optimizable parameters
 """
 function λ2p(::Type{T}, λs) where {T<:APar}
-    ps = [inv(bijector(T,k))(λ) for (k,λ) in zip(flattenable_symbols(T), λs)]
+    ps = [inverse(bijector(T,k))(λ) for (k,λ) in zip(flattenable_symbols(T), λs)]
     reconstruct(T, ps)
 end
 export p2λ, λ2p

test/parameters.jl

@@ -81,7 +81,7 @@ p = TestParameters()
             b = bijector(D)
             @test b(lb) == -Inf
             @test b(ub) == +Inf
-            b⁻¹ = inv(b)
+            b⁻¹ = inverse(b)
             @test b⁻¹(-Inf) == lb
             @test b⁻¹(+Inf) == ub
         end

test/runtests.jl

@@ -9,6 +9,7 @@ using SciMLBase
 using ForwardDiff, DualNumbers
 using DataFrames
 using Distributions
+using Bijectors
 using DataDeps
 using Plots