Replace "|&" syntax with "2>& |" syntax #917
Workflow file for this run
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| name: macos-ci-x86_64-build | |
| on: | |
| pull_request: | |
| paths-ignore: | |
| - 'doc/**' | |
| - '**.md' | |
| - '.github/ISSUE_TEMPLATE/*' | |
| - '.gitignore' | |
| workflow_dispatch: | |
| concurrency: | |
| group: ${{ github.workflow }}-${{ github.event.pull_request.number || github.ref }} | |
| cancel-in-progress: true | |
| defaults: | |
| run: | |
| shell: bash | |
| jobs: | |
| macos-ci-x86_64-build: | |
| runs-on: [macos-ci-x86_64] | |
| steps: | |
| - name: cleanup | |
| run: | | |
| pwd | |
| ls -lart | |
| rm -fr * | |
| - name: checkout | |
| uses: actions/checkout@v2 | |
| with: | |
| submodules: true | |
| - name: create-env | |
| run: | | |
| source ./setup.sh | |
| # DH* 20230302 - to avoid using padded_length for build caches, | |
| # always build in the same environment so that the length of the | |
| # path doesn't change - see also other 'DH* 20230302' changes below | |
| #export ENVNAME=${{ inputs.template || 'unified-dev' }}.macos-ci-x86_64 | |
| export ENVNAME=ci-env.macos-ci-x86_64 | |
| # *DH | |
| export ENVDIR=$PWD/envs/${ENVNAME} | |
| spack stack create env --site macos.default --template ${{ inputs.template || 'unified-dev' }} --name ${ENVNAME} | |
| spack env activate ${ENVDIR} | |
| spack add ${{ inputs.specs || '' }} | |
| export SPACK_SYSTEM_CONFIG_PATH="${ENVDIR}/site" | |
| # Find external packages | |
| spack external find --scope system --exclude bison --exclude openssl | |
| spack external find --scope system perl | |
| spack external find --scope system wget | |
| PATH="/usr/local/opt/curl/bin:$PATH" \ | |
| spack external find --scope system curl | |
| PATH="/usr/local/opt/qt5/bin:$PATH" \ | |
| spack external find --scope system qt | |
| spack external find --scope system texlive | |
| spack external find --scope system mysql | |
| # Find compilers | |
| spack compiler find --scope system | |
| export -n SPACK_SYSTEM_CONFIG_PATH | |
| # DH* 20230302 - Don't use yet, too many problems | |
| ## For buildcaches | |
| #spack config add config:install_tree:padded_length:true | |
| # *DH | |
| # Set compiler and MPI | |
| spack config add "packages:all:providers:mpi:[[email protected]]" | |
| spack config add "packages:all:compiler:[[email protected]]" | |
| sed -i '' "s/\['\%aocc', '\%apple-clang', '\%gcc', '\%intel'\]/\['\%apple-clang'\]/g" $ENVDIR/spack.yaml | |
| # Add additional variants for MET packages, different from config/common/packages.yaml | |
| spack config add "packages:met:variants:+python +grib2 +graphics +lidar2nc +modis" | |
| # Concretize and check for duplicates | |
| spack concretize 2>&1 | tee log.concretize.apple-clang-14.0.0 | |
| ${SPACK_STACK_DIR}/util/show_duplicate_packages.py -d log.concretize.apple-clang-14.0.0 -i fms -i crtm -i esmf -i mapl | |
| # Add and update source cache | |
| spack mirror add local-source file:///Users/ec2-user/spack-stack/source-cache/ | |
| spack mirror create -a -d /Users/ec2-user/spack-stack/source-cache/ | |
| # Add binary cache and reindex it | |
| spack mirror add local-binary file:///Users/ec2-user/spack-stack/build-cache/ | |
| spack buildcache update-index local-binary | |
| echo "Packages in combined spack build caches:" | |
| spack buildcache list | |
| # Break installation up in pieces and create build caches in between | |
| # This allows us to "spin up" builds that altogether take longer than | |
| # six hours, and/or fail later in the build process. | |
| # base-env | |
| echo "base-env ..." | |
| spack install --fail-fast --source --no-check-signature base-env 2>&1 | tee log.install.apple-clang-14.0.0.base-env | |
| spack buildcache create -a -u /Users/ec2-user/spack-stack/build-cache/ base-env | |
| # the rest | |
| echo "${{ inputs.template || 'unified-dev' }} ..." | |
| spack install --fail-fast --source --no-check-signature 2>&1 | tee log.install.apple-clang-14.0.0.${{ inputs.template || 'unified-dev' }} | |
| spack buildcache create -a -u /Users/ec2-user/spack-stack/build-cache/ | |
| # Next steps: synchronize source and build cache to a central/combined mirror? | |
| echo "Next steps ..." | |
| spack clean -a | |
| spack module lmod refresh -y | |
| spack stack setup-meta-modules | |
| spack env deactivate | |
| - name: test-env | |
| run: | | |
| source /usr/local/opt/lmod/init/profile | |
| # DH* 20230302 - to avoid using padded_length for build caches, | |
| # always build in the same environment so that the length of the | |
| # path doesn't change - see also other 'DH* 20230302' changes below | |
| #export ENVNAME=${{ inputs.template || 'unified-dev' }}.macos-ci-x86_64 | |
| export ENVNAME=ci-env.macos-ci-x86_64 | |
| # *DH | |
| export ENVDIR=$PWD/envs/${ENVNAME} | |
| ls -l ${ENVDIR}/install/modulefiles/Core | |
| module use ${ENVDIR}/install/modulefiles/Core | |
| module load stack-apple-clang/14.0.0 | |
| module load stack-openmpi/4.1.6 | |
| module load stack-python/3.10.13 | |
| module available | |
| module load jedi-ufs-env/1.0.0 | |
| module load ewok-env/1.0.0 | |
| module load soca-env/1.0.0 | |
| module list |