Fix divide-by-zero with poll period

2.0.5

fix: New default image (2.0.5)

Fixed typo in combine logic

• Fixed incorrect s3_out_url variable

Fixed fragmentation NF command indentation

• Which somehow got corrupted

More responsive poll period

• Was 1/30th of total time, is now 1/100th

Fix standardise when there's only one file

• The " was not working so this has been removed
• Improved README for standardise step
• Default image tag now 2.0.1

Key PostgreSQL tables now use 64-bit primary key (bigint)

• Also includes a number of playbook debug tweaks
• Better task naming
• Switch to Python 3.8.20 bullseye (Debian 11) caused b y build failures with prior 3.8.6 (buster) image

Now displays frag calcultaion conditions

1.3.2

fix: Now displays frag caculation conditions (and image is now 1.3.2)

Standardise play now logs total molecules and chink size

1.3.1

fix: New default image is 1.3.1

Output now ready for neo4j v4

• load-neo4.sh now uses --skip-bad-relationships and --skip-duplicate-nodes

Consistent poll-period variable names

• Combine now uses minutes rather than seconds
• More consistent timeout display prior to running nextflow
• Better nextflow Ansible task names