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fix: Now displays total molecule count and chunk size
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Alan Christie committed Sep 26, 2024
1 parent 4bc3c16 commit 250c9fb
Showing 1 changed file with 4 additions and 4 deletions.
8 changes: 4 additions & 4 deletions ansible/roles/standardise/tasks/standardise-file.yaml
Original file line number Diff line number Diff line change
Expand Up @@ -54,10 +54,6 @@
that:
- standchunksize | int > 0

- name: Display chunksize
debug:
var: standchunksize

# Set nextflow_timeout_minutes based on the expected input file(s), speed of python script and number of CPUS.
# If this is development or the value is lower than the default then the default is used.
- name: Set nextflow_timeout_calc
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debug:
msg: nextflow_timeout_minutes={{ nextflow_timeout_minutes }} nextflow_poll_period_minutes={{ nextflow_poll_period_minutes }}

- name: Display molecule count and chunk size
debug:
msg: Total molecules {{ mol_count }} chunk size {{ standchunksize }}

- name: Run nextflow (Standardize) (async)
command: "{{ nextflow_cmd }}"
async: "{{ nextflow_timeout_minutes|int * 60 }}"
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