Update performance results for Whelk 1.2.1.

perf/abox-consistency-whelk-1.yaml

@@ -1,11 +1,11 @@
 runs:
-  - total_time: 56.650167584
-    models_per_second: 81.02359085158959
+  - total_time: 54.546511417
+    models_per_second: 84.14836954301495
     inconsistent: 56
-  - total_time: 57.180463041
-    models_per_second: 80.27217262491982
+  - total_time: 54.342072417
+    models_per_second: 84.46494209455464
     inconsistent: 56
-  - total_time: 57.018156083
-    models_per_second: 80.50067408911723
+  - total_time: 54.815056667
+    models_per_second: 83.73611702865011
     inconsistent: 56
-average: 80.59881252187556
+average: 84.11647622207325

perf/abox-consistency-whelk-4.yaml

@@ -1,11 +1,11 @@
 runs:
-  - total_time: 16.875291583
-    models_per_second: 271.99530019522274
+  - total_time: 16.042678875
+    models_per_second: 286.11181684580094
     inconsistent: 56
-  - total_time: 16.94443625
-    models_per_second: 270.8853769035839
+  - total_time: 16.0373305
+    models_per_second: 286.2072338036558
     inconsistent: 56
-  - total_time: 16.934858167
-    models_per_second: 271.0385853094579
+  - total_time: 16.004304
+    models_per_second: 286.7978513779793
     inconsistent: 56
-average: 271.3064208027549
+average: 286.372300675812

perf/abox-consistency-whelk-8.yaml

@@ -1,11 +1,11 @@
 runs:
-  - total_time: 9.816001041
-    models_per_second: 467.6038623904217
+  - total_time: 9.186279834
+    models_per_second: 499.65819493236216
     inconsistent: 56
-  - total_time: 9.787052375
-    models_per_second: 468.98696605779634
+  - total_time: 9.146737333
+    models_per_second: 501.81828043099
     inconsistent: 56
-  - total_time: 9.767001458
-    models_per_second: 469.9497609105405
+  - total_time: 9.343586417
+    models_per_second: 491.2460585422336
     inconsistent: 56
-average: 468.8468631195862
+average: 497.5741779685286

perf/classification-time-whelk-UNIV-BENCH-OWL2EL.yaml

@@ -1,12 +1,12 @@
 runs:
-  - 0.023376416
-  - 0.017829458
-  - 0.016220333
-  - 0.015398166
-  - 0.02136725
-  - 0.014344833
-  - 0.01400725
-  - 0.0131655
-  - 0.011981084
-  - 0.011522709
-average: 0.0159212999
+  - 0.134700833
+  - 0.108798917
+  - 0.094067375
+  - 0.089982959
+  - 0.105331583
+  - 0.087947042
+  - 0.085902084
+  - 0.090490583
+  - 0.088173417
+  - 0.090485375
+average: 0.0975880168

perf/classification-time-whelk-nci-thesaurus.yaml

@@ -1,12 +1,12 @@
 runs:
-  - 22.387721959
-  - 22.761425459
-  - 22.809044208
-  - 22.439145292
-  - 22.804195083
-  - 22.389184875
-  - 22.349211292
-  - 22.04404675
-  - 22.177009167
-  - 22.461063625
-average: 22.462204771000003
+  - 24.481516959
+  - 24.316990291
+  - 24.058775166
+  - 24.101831292
+  - 24.101316416
+  - 24.099577208
+  - 24.363836375
+  - 24.037085625
+  - 23.875729292
+  - 24.184336292
+average: 24.162099491600003

perf/classification-time-whelk-uberon-go-cl-ro.yaml

@@ -1,12 +1,12 @@
 runs:
-  - 49.655627666
-  - 50.658481708
-  - 48.933700625
-  - 48.814521334
-  - 50.720092209
-  - 49.260320417
-  - 51.949872209
-  - 49.832813583
-  - 48.901309041
-  - 49.114506333
-average: 49.7841245125
+  - 47.667387708
+  - 46.336307334
+  - 46.455133125
+  - 46.073700667
+  - 47.180885042
+  - 47.140810292
+  - 47.177818333
+  - 46.760034042
+  - 46.5129415
+  - 46.771035208
+average: 46.8076053251

perf/dl-query-speed-elk-0.4.3-UNIV-BENCH-OWL2EL-1.yaml

@@ -1,12 +1,12 @@
 query_count: 23
-  - total_time: 0.033326042
-    queries_per_second: 690.1509636217826
+  - total_time: 0.036842375
+    queries_per_second: 624.2811436559126
     total_subclasses_result: 72
-  - total_time: 0.024107292
-    queries_per_second: 954.0681715723193
+  - total_time: 0.0271025
+    queries_per_second: 848.6302001660363
     total_subclasses_result: 72
-  - total_time: 0.023228708
-    queries_per_second: 990.1540800289022
+  - total_time: 0.028098792
+    queries_per_second: 818.540526582068
     total_subclasses_result: 72
-average: 878.1244050743347
+average: 763.8172901346721
 parallelism: 1

perf/dl-query-speed-elk-0.4.3-UNIV-BENCH-OWL2EL-4.yaml

@@ -1,12 +1,12 @@
 query_count: 23
-  - total_time: 0.035640291
-    queries_per_second: 645.3370428428882
+  - total_time: 0.0381825
+    queries_per_second: 602.3701957703136
     total_subclasses_result: 72
-  - total_time: 0.028687959
-    queries_per_second: 801.7300917085109
+  - total_time: 0.0317515
+    queries_per_second: 724.3752263672582
     total_subclasses_result: 72
-  - total_time: 0.024369166
-    queries_per_second: 943.8156398130326
+  - total_time: 0.03137925
+    queries_per_second: 732.9684425217301
     total_subclasses_result: 72
-average: 796.960924788144
+average: 686.5712882197673
 parallelism: 4

perf/dl-query-speed-elk-0.4.3-UNIV-BENCH-OWL2EL-8.yaml

@@ -1,12 +1,12 @@
 query_count: 23
-  - total_time: 0.03611925
-    queries_per_second: 636.7795566076262
+  - total_time: 0.036390125
+    queries_per_second: 632.0395986548548
     total_subclasses_result: 72
-  - total_time: 0.028288291
-    queries_per_second: 813.0572469012002
+  - total_time: 0.030471542
+    queries_per_second: 754.8026286296899
     total_subclasses_result: 72
-  - total_time: 0.02278675
-    queries_per_second: 1009.3585087825161
+  - total_time: 0.02361925
+    queries_per_second: 973.7819786826423
     total_subclasses_result: 72
-average: 819.7317707637809
+average: 786.8747353223956
 parallelism: 8

perf/dl-query-speed-whelk-UNIV-BENCH-OWL2EL-1.yaml

@@ -1,12 +1,12 @@
 query_count: 23
-  - total_time: 0.0085205
-    queries_per_second: 2699.3721025761397
+  - total_time: 0.009323
+    queries_per_second: 2467.01705459616
     total_subclasses_result: 72
-  - total_time: 0.010691417
-    queries_per_second: 2151.2583411534692
+  - total_time: 0.024174875
+    queries_per_second: 951.4009896638556
     total_subclasses_result: 72
-  - total_time: 0.006617833
-    queries_per_second: 3475.4579029117235
+  - total_time: 0.011119583
+    queries_per_second: 2068.422889599367
     total_subclasses_result: 72
-average: 2775.3627822137773
+average: 1828.9469779531275
 parallelism: 1

perf/dl-query-speed-whelk-UNIV-BENCH-OWL2EL-4.yaml

@@ -1,12 +1,12 @@
 query_count: 23
-  - total_time: 0.008109084
-    queries_per_second: 2836.3252865551767
+  - total_time: 0.0080655
+    queries_per_second: 2851.65209844399
     total_subclasses_result: 72
-  - total_time: 0.007255833
-    queries_per_second: 3169.863473980176
+  - total_time: 0.010693292
+    queries_per_second: 2150.881131834799
     total_subclasses_result: 72
-  - total_time: 0.009988875
-    queries_per_second: 2302.561599779755
+  - total_time: 0.008216458
+    queries_per_second: 2799.259729679139
     total_subclasses_result: 72
-average: 2769.58345343837
+average: 2600.5976533193093
 parallelism: 4

perf/dl-query-speed-whelk-UNIV-BENCH-OWL2EL-8.yaml

@@ -1,12 +1,12 @@
 query_count: 23
-  - total_time: 0.00756625
-    queries_per_second: 3039.8149677845695
+  - total_time: 0.007768375
+    queries_per_second: 2960.7221587526346
     total_subclasses_result: 72
-  - total_time: 0.006511792
-    queries_per_second: 3532.0538493858526
+  - total_time: 0.008376708
+    queries_per_second: 2745.708696065328
     total_subclasses_result: 72
-  - total_time: 0.0060965
-    queries_per_second: 3772.6564422209462
+  - total_time: 0.016743375
+    queries_per_second: 1373.677648622216
     total_subclasses_result: 72
-average: 3448.1750864637893
+average: 2360.0361678133927
 parallelism: 8

perf/dl-query-speed-whelk-nci-thesaurus-1.yaml

@@ -1,12 +1,12 @@
 query_count: 46685
-  - total_time: 20.628322417
-    queries_per_second: 2263.150587637046
+  - total_time: 20.329595916
+    queries_per_second: 2296.4057029415676
     total_subclasses_result: 1091699
-  - total_time: 20.258945625
-    queries_per_second: 2304.414102498486
+  - total_time: 20.266477042
+    queries_per_second: 2303.5577374030313
     total_subclasses_result: 1091699
-  - total_time: 20.595273584
-    queries_per_second: 2266.782221153329
+  - total_time: 20.1381925
+    queries_per_second: 2318.231886997803
     total_subclasses_result: 1091699
-average: 2278.115637096287
+average: 2306.065109114134
 parallelism: 1

perf/dl-query-speed-whelk-nci-thesaurus-4.yaml

@@ -1,12 +1,12 @@
 query_count: 46685
-  - total_time: 5.554484
-    queries_per_second: 8404.921141189712
+  - total_time: 5.839449375
+    queries_per_second: 7994.760636143027
     total_subclasses_result: 1091699
-  - total_time: 6.113228667
-    queries_per_second: 7636.717443928063
+  - total_time: 5.750739417
+    queries_per_second: 8118.086495450051
     total_subclasses_result: 1091699
-  - total_time: 5.972687458
-    queries_per_second: 7816.4143575717635
+  - total_time: 5.580635167
+    queries_per_second: 8365.535212920326
     total_subclasses_result: 1091699
-average: 7952.684314229847
+average: 8159.460781504468
 parallelism: 4

perf/dl-query-speed-whelk-nci-thesaurus-8.yaml

@@ -1,12 +1,12 @@
 query_count: 46685
-  - total_time: 3.215000208
-    queries_per_second: 14520.994394909227
+  - total_time: 3.45496675
+    queries_per_second: 13512.431053062955
     total_subclasses_result: 1091699
-  - total_time: 3.414133625
-    queries_per_second: 13674.040072172043
+  - total_time: 3.623531542
+    queries_per_second: 12883.839828321827
     total_subclasses_result: 1091699
-  - total_time: 3.152783625
-    queries_per_second: 14807.549630051126
+  - total_time: 3.18878
+    queries_per_second: 14640.395386323296
     total_subclasses_result: 1091699
-average: 14334.19469904413
+average: 13678.888755902692
 parallelism: 8

perf/dl-query-speed-whelk-uberon-go-cl-ro-1.yaml

@@ -1,12 +1,12 @@
 query_count: 66169
-  - total_time: 48.787401625
-    queries_per_second: 1356.272271038374
+  - total_time: 47.107266167
+    queries_per_second: 1404.6452996322105
     total_subclasses_result: 1526774
-  - total_time: 50.1838915
-    queries_per_second: 1318.5306683520148
+  - total_time: 47.262312917
+    queries_per_second: 1400.0372795170454
     total_subclasses_result: 1526774
-  - total_time: 50.021178667
-    queries_per_second: 1322.8196888461775
+  - total_time: 47.762115625
+    queries_per_second: 1385.3867052188396
     total_subclasses_result: 1526774
-average: 1332.5408760788555
+average: 1396.6897614560319
 parallelism: 1

perf/dl-query-speed-whelk-uberon-go-cl-ro-4.yaml

@@ -1,12 +1,12 @@
 query_count: 66169
-  - total_time: 13.852153625
-    queries_per_second: 4776.80235083301
+  - total_time: 12.9397415
+    queries_per_second: 5113.626110691624
     total_subclasses_result: 1526774
-  - total_time: 14.0974355
-    queries_per_second: 4693.690565209537
+  - total_time: 13.250811125
+    queries_per_second: 4993.58110049282
     total_subclasses_result: 1526774
-  - total_time: 14.255504291
-    queries_per_second: 4641.645686415654
+  - total_time: 13.214369417
+    queries_per_second: 5007.352065916593
     total_subclasses_result: 1526774
-average: 4704.046200819401
+average: 5038.186425700345
 parallelism: 4

perf/dl-query-speed-whelk-uberon-go-cl-ro-8.yaml

@@ -1,12 +1,12 @@
 query_count: 66169
-  - total_time: 7.757764208
-    queries_per_second: 8529.390456565421
+  - total_time: 7.615574542
+    queries_per_second: 8688.641892358488
     total_subclasses_result: 1526774
-  - total_time: 7.672512875
-    queries_per_second: 8624.16278447757
+  - total_time: 7.567250667
+    queries_per_second: 8744.126884623525
     total_subclasses_result: 1526774
-  - total_time: 7.397184667
-    queries_per_second: 8945.159946484813
+  - total_time: 7.542833333
+    queries_per_second: 8772.432994178687
     total_subclasses_result: 1526774
-average: 8699.571062509269
+average: 8735.067257053566
 parallelism: 8

scala/abox-consistency-whelk.sc

@@ -1,7 +1,7 @@
 //> using scala "2.13"
 //> using dep "net.sourceforge.owlapi:owlapi-distribution:4.5.29"
 //> using dep "com.outr::scribe-slf4j2:3.15.0"
-//> using dep "org.geneontology::whelk-owlapi:1.1.2"
+//> using dep "org.geneontology::whelk-owlapi:1.2.1"
 //> using dep "dev.zio::zio-streams:2.1.4"
 
 import scala.jdk.CollectionConverters._