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ubyndr committed Aug 23, 2024
1 parent 9d1a28e commit 233cbf8
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2 changes: 1 addition & 1 deletion _modules/pandasaurus_cxg/utils/anndata_loader.html
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Expand Up @@ -99,7 +99,7 @@ <h1>Source code for pandasaurus_cxg.utils.anndata_loader</h1><div class="highlig
<span class="k">with</span> <span class="n">warnings</span><span class="o">.</span><span class="n">catch_warnings</span><span class="p">():</span>
<span class="n">warnings</span><span class="o">.</span><span class="n">simplefilter</span><span class="p">(</span><span class="s2">&quot;ignore&quot;</span><span class="p">,</span> <span class="n">category</span><span class="o">=</span><span class="n">anndata</span><span class="o">.</span><span class="n">ImplicitModificationWarning</span><span class="p">)</span>
<span class="k">try</span><span class="p">:</span>
<span class="n">anndata_obj</span> <span class="o">=</span> <span class="n">anndata</span><span class="o">.</span><span class="n">read</span><span class="p">(</span><span class="n">file_path</span><span class="p">,</span> <span class="n">backed</span><span class="o">=</span><span class="s2">&quot;r&quot;</span><span class="p">)</span>
<span class="n">anndata_obj</span> <span class="o">=</span> <span class="n">anndata</span><span class="o">.</span><span class="n">read_h5ad</span><span class="p">(</span><span class="n">file_path</span><span class="p">,</span> <span class="n">backed</span><span class="o">=</span><span class="s2">&quot;r&quot;</span><span class="p">)</span>
<span class="k">return</span> <span class="n">anndata_obj</span>
<span class="k">except</span> <span class="ne">Exception</span> <span class="k">as</span> <span class="n">e</span><span class="p">:</span>
<span class="nb">print</span><span class="p">(</span><span class="sa">f</span><span class="s2">&quot;An error occurred while loading the file: </span><span class="si">{</span><span class="n">e</span><span class="si">}</span><span class="s2">&quot;</span><span class="p">)</span>
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