Merge pull request #1029 from INCATools/create-pull-request/patch

Update constraints.txt

constraints.txt

@@ -16,7 +16,7 @@ bcp47==0.0.4
 beautifulsoup4==4.12.3
 bidict==0.23.1
 bleach==6.1.0
-bmt==1.2.0
+bmt==1.2.1
 cachetools==5.3.3
 cattrs==23.2.3
 certifi==2024.2.2
@@ -28,11 +28,11 @@ class_resolver==0.4.3
 click==8.1.7
 click-default-group==1.2.4
 colorama==0.4.6
-comm==0.2.1
+comm==0.2.2
 commonmark==0.9.1
 contourpy==1.2.0
 cryptography==42.0.5
-curies==0.7.7
+curies==0.7.8
 cycler==0.12.1
 dacite==1.8.1
 daff==1.3.46
@@ -57,19 +57,19 @@ exceptiongroup==1.2.0
 executing==2.0.1
 fastjsonschema==2.19.1
 fastobo==0.12.3
-filelock==3.13.1
-fonttools==4.49.0
+filelock==3.13.3
+fonttools==4.50.0
 fqdn==1.5.1
 funowl==0.2.3
 ghp-import==2.1.0
 google==3.0.0
-google-api-core==2.17.1
-google-api-python-client==2.120.0
-google-auth==2.28.1
+google-api-core==2.18.0
+google-api-python-client==2.123.0
+google-auth==2.29.0
 google-auth-httplib2==0.2.0
 google-auth-oauthlib==1.2.0
-googleapis-common-protos==1.62.0
-graphviz==0.20.1
+googleapis-common-protos==1.63.0
+graphviz==0.20.3
 greenlet==3.0.3
 gspread==6.0.2
 gspread-formatting==1.1.2
@@ -81,8 +81,8 @@ httpx==0.27.0
 idna==3.6
 ijson==3.2.3
 imagesize==1.4.1
-importlib-metadata==7.0.1
-importlib_resources==6.1.2
+importlib_metadata==7.1.0
+importlib_resources==6.4.0
 inflection==0.5.1
 iniconfig==2.0.0
 ipykernel==6.29.3
@@ -92,16 +92,18 @@ isodate==0.6.1
 isoduration==20.11.0
 j2cli==0.3.10
 jaraco.classes==3.3.1
+jaraco.context==4.3.0
+jaraco.functools==4.0.0
 jedi==0.19.1
 jeepney==0.8.0
 Jinja2==3.1.3
 jsbeautifier==1.15.1
 jsobject==0.10.2
 json-flattener==0.1.9
-json5==0.9.20
+json5==0.9.24
 jsonasobj==1.3.1
 jsonasobj2==1.0.4
-jsonlines==3.1.0
+jsonlines==4.0.0
 jsonpatch==1.33
 jsonpath-ng==1.6.1
 jsonpath-rw==1.4.0
@@ -113,71 +115,71 @@ jsonschema2md==1.1.0
 jsonstreams==0.6.0
 jupyter==1.0.0
 jupyter-console==6.6.3
-jupyter-events==0.9.0
-jupyter-lsp==2.2.3
-jupyter_client==8.6.0
-jupyter_core==5.7.1
+jupyter-events==0.10.0
+jupyter-lsp==2.2.4
+jupyter_client==8.6.1
+jupyter_core==5.7.2
 jupyter_server==2.13.0
-jupyter_server_terminals==0.5.2
-jupyterlab==4.1.2
+jupyter_server_terminals==0.5.3
+jupyterlab==4.1.5
 jupyterlab_pygments==0.3.0
-jupyterlab_server==2.25.3
+jupyterlab_server==2.25.4
 jupyterlab_widgets==3.0.10
-keyring==24.3.1
+keyring==25.0.0
 kgcl-rdflib==0.5.0
-kgcl_schema==0.6.4
-kgx==2.3.0
+kgcl_schema==0.6.6
+kgx==2.3.1
 kiwisolver==1.4.5
 lark==1.1.9
 lightrdf==0.4.0
-linkml==1.7.5
+linkml==1.7.6
 linkml-dataops==0.1.0
 linkml-renderer==0.3.0
-linkml-runtime==1.7.2
+linkml-runtime==1.7.4
 llm==0.13.1
 lxml==5.1.0
-Markdown==3.5.2
+Markdown==3.6
 markdown-it-py==3.0.0
 MarkupSafe==2.1.5
-marshmallow==3.21.0
+marshmallow==3.21.1
 matplotlib==3.8.3
 matplotlib-inline==0.1.6
 matplotlib-venn==0.11.10
 mdurl==0.1.2
 mergedeep==1.3.4
 mistune==3.0.2
 mkdocs==1.5.3
-mkdocs-material==9.5.12
+mkdocs-material==9.5.15
 mkdocs-material-extensions==1.3.1
 mkdocs-mermaid2-plugin==0.6.0
 mkdocs-table-reader-plugin==2.1.0
 more-click==0.1.2
 more-itertools==10.2.0
-mypy==1.8.0
+mypy==1.9.0
 mypy-extensions==1.0.0
-nbclient==0.9.0
-nbconvert==7.16.1
-nbformat==5.9.2
+nbclient==0.10.0
+nbconvert==7.16.3
+nbformat==5.10.3
 ndex2==3.8.0
 neo4j==4.4.11
 nest-asyncio==1.6.0
 networkx==3.2.1
-nh3==0.2.15
-notebook==7.1.1
+nh3==0.2.17
+notebook==7.1.2
 notebook_shim==0.2.4
 numpy==1.26.4
-oaklib==0.5.25
+oaklib==0.5.32
 oauthlib==3.2.2
 ols-client==0.1.4
 ontobio==2.8.22
 ontodev-cogs==0.3.3
 ontodev-gizmos==0.3.2
 ontoportal-client==0.0.4
-openai==1.13.3
+openai==1.14.3
 openpyxl==3.1.2
 ordered-set==4.1.0
 overrides==7.7.0
-packaging==23.2
+packaging==24.0
 paginate==0.5.6
 pandas==2.2.1
 pandocfilters==1.5.1
@@ -189,7 +191,7 @@ pexpect==4.9.0
 pillow==10.2.0
 pkginfo==1.10.0
 platformdirs==4.2.0
-plotly==5.19.0
+plotly==5.20.0
 pluggy==1.4.0
 ply==3.11
 prefixcommons==0.1.12
@@ -198,21 +200,22 @@ prologterms==0.0.6
 prometheus_client==0.20.0
 prompt-toolkit==3.0.43
 pronto==2.5.6
+proto-plus==1.23.0
 protobuf==4.25.3
 psutil==5.9.8
 ptyprocess==0.7.0
 pure-eval==0.2.2
 pyasn1==0.5.1
 pyasn1-modules==0.3.0
 pycparser==2.21
-pydantic==2.6.3
+pydantic==2.6.4
 pydantic_core==2.16.3
 pydotplus==2.0.2
-PyGithub==2.2.0
+PyGithub==2.3.0
 Pygments==2.17.2
 PyJSG==0.11.10
 PyJWT==2.8.0
-pymdown-extensions==10.7
+pymdown-extensions==10.7.1
 PyNaCl==1.5.0
 pyparsing==2.4.7
 pyproject-api==1.6.1
@@ -221,12 +224,12 @@ PyShExC==0.9.1
 pysolr==3.9.0
 pyspellchecker==0.8.1
 pystow==0.5.3
-pytest==8.1.0
+pytest==8.1.1
 pytest-logging==2015.11.4
 python-dateutil==2.9.0.post0
 python-dotenv==1.0.1
 python-json-logger==2.0.7
-python-ulid==2.2.0
+python-ulid==2.3.0
 PyTrie==0.4.0
 pytz==2024.1
 PyYAML==6.0.1
@@ -240,11 +243,11 @@ rdflib-jsonld==0.6.1
 rdflib-shim==1.0.3
 readme_renderer==43.0
 recommonmark==0.7.1
-referencing==0.33.0
+referencing==0.34.0
 regex==2023.12.25
 requests==2.31.0
 requests-cache==1.2.0
-requests-oauthlib==1.3.1
+requests-oauthlib==2.0.0
 requests-toolbelt==1.0.0
 rfc3339-validator==0.1.4
 rfc3986==2.0.0
@@ -258,7 +261,6 @@ ruamel.yaml.clib==0.2.8
 scipy==1.12.0
 seaborn==0.13.2
 SecretStorage==3.3.3
-semsimian==0.2.12
 semsql==0.3.3
 Send2Trash==1.8.2
 ShExJSG==0.8.2
@@ -276,30 +278,30 @@ sphinxcontrib-htmlhelp==2.0.5
 sphinxcontrib-jsmath==1.0.1
 sphinxcontrib-qthelp==1.0.7
 sphinxcontrib-serializinghtml==1.1.10
-SQLAlchemy==2.0.27
+SQLAlchemy==2.0.29
 SQLAlchemy-Utils==0.38.3
 sqlite-fts4==1.0.3
 sqlite-migrate==0.1b0
 sqlite-utils==3.36
-sssom==0.4.4
+sssom==0.4.5
 sssom-schema==0.15.0
 stack-data==0.6.3
 StrEnum==0.4.15
 stringcase==1.2.0
 tabulate==0.9.0
 tenacity==8.2.3
 termcolor==2.4.0
-terminado==0.18.0
+terminado==0.18.1
 terminaltables==3.1.10
 tinycss2==1.2.1
 tomli==2.0.1
 tornado==6.4
-tox==4.13.0
+tox==4.14.2
 tqdm==4.66.2
-traitlets==5.14.1
+traitlets==5.14.2
 tsvalid==0.0.3
 twine==5.0.0
-types-python-dateutil==2.8.19.20240106
+types-python-dateutil==2.9.0.20240316
 typing-inspect==0.9.0
 typing_extensions==4.10.0
 tzdata==2024.1
@@ -319,4 +321,4 @@ widgetsnbextension==4.0.10
 wrapt==1.16.0
 xmltodict==0.13.0
 yamldown==0.1.8
-zipp==3.17.0
+zipp==3.18.1