Update constraints.txt

constraints.txt

@@ -2,7 +2,7 @@ airium==0.2.6
 alabaster==1.0.0
 annotated-types==0.7.0
 antlr4-python3-runtime==4.9.3
-anyio==4.4.0
+anyio==4.6.2
 appdirs==1.4.4
 argon2-cffi==23.1.0
 argon2-cffi-bindings==21.2.0
@@ -19,13 +19,13 @@ bidict==0.23.1
 bleach==6.1.0
 bmt==1.4.4
 cachetools==5.5.0
-cattrs==24.1.1
+cattrs==24.1.2
 certifi==2024.8.30
 cffi==1.17.1
 CFGraph==0.2.1
 chardet==5.2.0
-charset-normalizer==3.3.2
-class_resolver==0.5.0
+charset-normalizer==3.4.0
+class_resolver==0.5.2
 click==8.1.7
 click-default-group==1.2.4
 colorama==0.4.6
@@ -40,13 +40,13 @@ daff==1.3.46
 dataclasses==0.6
 dataclasses-json==0.6.7
 dataclasses-jsonschema==2.16.0
-debugpy==1.8.5
+debugpy==1.8.7
 decorator==5.1.1
 defusedxml==0.7.1
 Deprecated==1.2.14
 deprecation==2.1.0
 diskcache==5.6.3
-distlib==0.3.8
+distlib==0.3.9
 distro==1.9.0
 docker==6.1.3
 docutils==0.21.2
@@ -58,25 +58,25 @@ exceptiongroup==1.2.2
 executing==2.1.0
 fastjsonschema==2.20.0
 fastobo==0.12.3
-filelock==3.16.0
-fonttools==4.53.1
+filelock==3.16.1
+fonttools==4.54.1
 fqdn==1.5.1
 funowl==0.2.3
 ghp-import==2.1.0
 google==3.0.0
-google-api-core==2.19.2
-google-api-python-client==2.145.0
-google-auth==2.34.0
+google-api-core==2.21.0
+google-api-python-client==2.149.0
+google-auth==2.35.0
 google-auth-httplib2==0.2.0
 google-auth-oauthlib==1.2.1
 googleapis-common-protos==1.65.0
 graphviz==0.20.3
-greenlet==3.1.0
-gspread==6.1.2
+greenlet==3.1.1
+gspread==6.1.3
 gspread-formatting==1.2.0
 h11==0.14.0
 hbreader==0.9.1
-httpcore==1.0.5
+httpcore==1.0.6
 httplib2==0.22.0
 httpx==0.27.2
 idna==3.10
@@ -87,19 +87,19 @@ importlib_resources==6.4.5
 inflection==0.5.1
 iniconfig==2.0.0
 ipykernel==6.29.5
-ipython==8.27.0
+ipython==8.28.0
 ipywidgets==8.1.5
 isodate==0.6.1
 isoduration==20.11.0
 jaraco.classes==3.4.0
 jaraco.context==6.0.1
-jaraco.functools==4.0.2
+jaraco.functools==4.1.0
 jedi==0.19.1
 jeepney==0.8.0
 Jinja2==3.1.4
-jinjanator==24.3.0
-jinjanator-plugins==24.1.0
-jiter==0.5.0
+jinjanator==24.4.0
+jinjanator-plugins==24.2.0
+jiter==0.6.1
 jsbeautifier==1.15.1
 jsobject==0.10.2
 json-flattener==0.1.9
@@ -108,42 +108,42 @@ jsonasobj==1.3.1
 jsonasobj2==1.0.4
 jsonlines==4.0.0
 jsonpatch==1.33
-jsonpath-ng==1.6.1
+jsonpath-ng==1.7.0
 jsonpath-rw==1.4.0
 jsonpickle==3.3.0
 jsonpointer==3.0.0
 jsonschema==4.23.0
-jsonschema-specifications==2023.12.1
+jsonschema-specifications==2024.10.1
 jsonschema2md==1.3.0
 jsonstreams==0.6.0
 jupyter==1.1.1
 jupyter-console==6.6.3
 jupyter-events==0.10.0
 jupyter-lsp==2.2.5
-jupyter_client==8.6.2
+jupyter_client==8.6.3
 jupyter_core==5.7.2
 jupyter_server==2.14.2
 jupyter_server_terminals==0.5.3
 jupyterlab==4.2.5
 jupyterlab_pygments==0.3.0
 jupyterlab_server==2.27.3
 jupyterlab_widgets==3.0.13
-keyring==25.3.0
+keyring==25.4.1
 kgcl-rdflib==0.5.0
 kgcl_schema==0.6.9
 kgx==2.4.2
 kiwisolver==1.4.7
 lark==1.2.2
 lightrdf==0.4.0
-linkml==1.8.3
+linkml==1.8.4
 linkml-dataops==0.1.0
 linkml-renderer==0.3.1
-linkml-runtime==1.8.2
+linkml-runtime==1.8.3
 llm==0.13.1
 lxml==5.3.0
 Markdown==3.7
 markdown-it-py==3.0.0
-MarkupSafe==2.1.5
+MarkupSafe==3.0.1
 marshmallow==3.22.0
 matplotlib==3.9.2
 matplotlib-inline==0.1.7
@@ -153,39 +153,39 @@ mergedeep==1.3.4
 mistune==3.0.2
 mkdocs==1.6.1
 mkdocs-get-deps==0.2.0
-mkdocs-material==9.5.34
+mkdocs-material==9.5.40
 mkdocs-material-extensions==1.3.1
 mkdocs-mermaid2-plugin==1.1.1
 mkdocs-table-reader-plugin==3.1.0
 more-click==0.1.2
 more-itertools==10.5.0
-mypy==1.11.2
+mypy==1.12.0
 mypy-extensions==1.0.0
 nbclient==0.10.0
 nbconvert==7.16.4
 nbformat==5.10.4
 ndex2==3.9.0
-neo4j==5.24.0
+neo4j==5.25.0
 nest-asyncio==1.6.0
-networkx==3.3
+networkx==3.4.1
 nh3==0.2.18
 notebook==7.2.2
 notebook_shim==0.2.4
 numpy==1.26.4
-oaklib==0.6.16
+oaklib==0.6.17
 oauthlib==3.2.2
 ols-client==0.1.4
 ontobio==2.9.10
 ontodev-cogs==0.3.3
 ontodev-gizmos==0.3.2
 ontoportal-client==0.0.4
-openai==1.45.0
+openai==1.51.2
 openpyxl==3.1.5
 ordered-set==4.1.0
 overrides==7.7.0
 packaging==24.1
 paginate==0.5.7
-pandas==2.2.2
+pandas==2.2.3
 pandocfilters==1.5.1
 pansql==0.0.1
 parse==1.20.2
@@ -194,47 +194,47 @@ pathspec==0.12.1
 pexpect==4.9.0
 pillow==10.4.0
 pkginfo==1.10.0
-platformdirs==4.3.3
+platformdirs==4.3.6
 plotly==5.24.1
 pluggy==1.5.0
 ply==3.11
 prefixcommons==0.1.12
 prefixmaps==0.2.5
 prologterms==0.0.6
-prometheus_client==0.20.0
-prompt_toolkit==3.0.47
+prometheus_client==0.21.0
+prompt_toolkit==3.0.48
 pronto==2.5.8
 proto-plus==1.24.0
-protobuf==5.28.1
+protobuf==5.28.2
 psutil==6.0.0
 ptyprocess==0.7.0
 pure_eval==0.2.3
 pyarrow==15.0.2
 pyasn1==0.6.1
 pyasn1_modules==0.4.1
 pycparser==2.22
-pydantic==2.9.1
-pydantic_core==2.23.3
+pydantic==2.9.2
+pydantic_core==2.23.4
 pydotplus==2.0.2
 PyGithub==2.4.0
 Pygments==2.18.0
 PyJSG==0.11.10
 PyJWT==2.9.0
-pymdown-extensions==10.9
+pymdown-extensions==10.11.2
 PyNaCl==1.5.0
 pyparsing==2.4.7
-pyproject-api==1.7.1
+pyproject-api==1.8.0
 PyShEx==0.8.1
 PyShExC==0.9.1
-pysolr==3.9.0
+pysolr==3.10.0
 pyspellchecker==0.8.1
-pystow==0.5.5
+pystow==0.5.6
 pytest==8.3.3
 pytest-logging==2015.11.4
 python-dateutil==2.9.0.post0
 python-dotenv==1.0.1
 python-json-logger==2.0.7
-python-ulid==2.7.0
+python-ulid==3.0.0
 PyTrie==0.4.0
 pytz==2024.2
 PyYAML==6.0.2
@@ -256,7 +256,7 @@ rfc3339-validator==0.1.4
 rfc3986==2.0.0
 rfc3986-validator==0.1.1
 rfc3987==1.3.8
-rich==13.8.1
+rich==13.9.2
 rpds-py==0.20.0
 rsa==4.9
 ruamel.yaml==0.18.6
@@ -275,14 +275,14 @@ sortedcontainers==2.4.0
 soupsieve==2.6
 sparqlslurper==0.5.1
 SPARQLWrapper==2.0.0
-Sphinx==8.0.2
+Sphinx==8.1.3
 sphinxcontrib-applehelp==2.0.0
 sphinxcontrib-devhelp==2.0.0
 sphinxcontrib-htmlhelp==2.1.0
 sphinxcontrib-jsmath==1.0.1
 sphinxcontrib-qthelp==2.0.0
 sphinxcontrib-serializinghtml==2.0.0
-SQLAlchemy==2.0.34
+SQLAlchemy==2.0.35
 SQLAlchemy-Utils==0.38.3
 sqlite-fts4==1.0.3
 sqlite-migrate==0.1b0
@@ -293,29 +293,29 @@ stack-data==0.6.3
 stringcase==1.2.0
 tabulate==0.9.0
 tenacity==9.0.0
-termcolor==2.4.0
+termcolor==2.5.0
 terminado==0.18.1
 terminaltables==3.1.10
 tinycss2==1.3.0
-tomli==2.0.1
+tomli==2.0.2
 tornado==6.4.1
-tox==4.18.1
+tox==4.21.2
 tqdm==4.66.5
 traitlets==5.14.3
 tsvalid==0.0.3
 twine==5.1.1
-types-python-dateutil==2.9.0.20240906
+types-python-dateutil==2.9.0.20241003
 typing-inspect==0.9.0
 typing_extensions==4.12.2
-tzdata==2024.1
+tzdata==2024.2
 UpSetPlot==0.9.0
 uri-template==1.3.0
 uritemplate==4.1.1
 url-normalize==1.4.3
 urllib3==2.2.3
 validators==0.20.0
-virtualenv==20.26.4
-watchdog==5.0.2
+virtualenv==20.26.6
+watchdog==5.0.3
 wcwidth==0.2.13
 webcolors==24.8.0
 webencodings==0.5.1