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Remove outdated warning, fix minor typos #814

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8 changes: 4 additions & 4 deletions docs/guide/mappings.rst
Original file line number Diff line number Diff line change
Expand Up @@ -145,10 +145,10 @@ If we query for the ZFA ID we see the complete set of ZFA mappings for that term

So ZFA bundles mappings to TAO.

At the time of writing ZFA, does bundle mappings to CL.
At the time of writing, ZFA does bundle mappings to CL.

In future OAK may have easier ways to query a union of ontologies, and in the future OBO ontologies
may redistribute reciprocal mappings, but for now it helps to know how each ontology handles mappings to
In the future, OAK may have easier ways to query a union of ontologies, and OBO ontologies may
redistribute reciprocal mappings, but for now it helps to know how each ontology handles mappings to
use these effectively.

Support for SSSOM
Expand All @@ -166,7 +166,7 @@ Generating Mappings

OAK also includes a functionality for *generating* mappings, via the `lexmatch` command.

See the `Lexmatch tutorial <https://oboacademy.github.io/obook/tutorial/lexmatch-tutorial/>`_. on OBO Academy.
See the `Lexmatch tutorial <https://oboacademy.github.io/obook/tutorial/lexmatch-tutorial/>`_ on OBO Academy.

Further reading
---------------
Expand Down
4 changes: 2 additions & 2 deletions docs/guide/relationships-and-graphs.rst
Original file line number Diff line number Diff line change
Expand Up @@ -6,7 +6,7 @@ Relationships and Graphs
One of the main uses of an ontology is to precisely state the :term:`Relationships<Relationship>` between different entities or concepts.

In OAK, classes in ontologies can be related to one another via different *relationship types*, also known as :term:`Predicates<Predicate>`. These
may come from a relationship type ontology such as :term:`RO`, or they may be a "builtin" construct in :term:`RDF` or :term:`OWL`
may come from a relationship type ontology such as :term:`RO`, or they may be a "built-in" construct in :term:`RDF` or :term:`OWL`
such as ``rdfs:subClassOf``.

These can be thought of as a :term:`Graph` of concepts and relationships. This is a common idiom
Expand Down Expand Up @@ -479,4 +479,4 @@ The following table outlines some common patterns and whether these are projecte

See `OWLStar <https://github.com/linkml/owlstar>`_ for progress towards a standardization of OWL
graph projections for property graphs - this also includes proposals for labeling edges with axiom
types as well as additional semantic information (e.g. cardinality) and annotations.
types as well as additional semantic information (e.g. cardinality) and annotations.
7 changes: 1 addition & 6 deletions docs/intro/tutorial06.rst
Original file line number Diff line number Diff line change
@@ -1,11 +1,6 @@
Part 6: Working With OWL
=====================

.. warning ::

this functionality is not available until v0.3.0
we are waiting for one rdflib PR (https://github.com/RDFLib/rdflib/pull/1686) to be merged...

OAK comes bundled with the `funowl <https://github.com/hsolbrig/funowl/>`_ library


Expand All @@ -22,4 +17,4 @@ TODO
ROBOT Plugin
------------

See `oakx-robot <https://github.com/INCATools/oakx-robot>`_
See `oakx-robot <https://github.com/INCATools/oakx-robot>`_
4 changes: 1 addition & 3 deletions docs/intro/tutorial08.rst
Original file line number Diff line number Diff line change
Expand Up @@ -6,7 +6,7 @@ Part 8: Applying Changes to Ontologies
.. warning::

Apply changes is an experimental feature. This documentation is provided for alpha testers
to try out existing functionality. Currently on a fraction of the KGCL specification is
to try out existing functionality. Currently only a fraction of the KGCL specification is
implemented.

OAK allows various kinds of changes to be applied to ontologies, including:
Expand Down Expand Up @@ -94,5 +94,3 @@ To make edits and export to a new file:
runoak -i go-edit.obo set-obsolete nucleus -o go-edit-out.obo -O obo

This will apply the obsoletion changes in memory and then save results to a separate obo file.


2 changes: 1 addition & 1 deletion docs/packages/interfaces/index.rst
Original file line number Diff line number Diff line change
Expand Up @@ -50,6 +50,6 @@ The most common operations are found in the :ref:`basic_ontology_interface`

.. note::

Some interfaces may not be "pure" interfaces is that they may provide
Some interfaces may not be "pure" interfaces, in that they may provide
a default implementation, which may or may not be overridden by an
implementation
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