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graph projections and subset validation #806

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Oct 1, 2024
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@cmungall cmungall commented Oct 1, 2024

We now include support for SubClassOf-hasValue pattern, exemplied by OBI's relationship between sequencers and manufacturers.

obi relationships MiSeq

yields:

subject predicate object subject_label predicate_label object_label
OBI:0002003 rdfs:subClassOf OBI:0400103 MiSeq None DNA sequencer
OBI:0002003 OBI:0000304 OBI:0000759 MiSeq is_manufactured_by Illumina

We also now include a test ontology for graph projections that could form part of a general test suite outside of OAK.

The OAK guide now includes a section on graph projections:

https://incatools.github.io/ontology-access-kit/guide/relationships-and-graphs.html#further-notes-on-owl-and-graph-projection

Also: Adding a validate-subset command

Fixes #807

@cmungall cmungall changed the title additional graph projections graph projections and subset validation Oct 1, 2024
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add SubClassOf ObjectHasValue to the recognized graph projection patterns
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