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_sources/datamodels/mapping-rules/MappingRule.md.txt

@@ -112,6 +112,7 @@ attributes:
     rank: 1000
     domain_of:
     - MappingRule
+    - Synonymizer
   oneway:
     name: oneway
     description: if true then subject and object can be switched and predicate inverted
@@ -167,6 +168,7 @@ attributes:
     owner: MappingRule
     domain_of:
     - MappingRule
+    - Synonymizer
     range: string
   oneway:
     name: oneway

_sources/datamodels/mapping-rules/MappingRuleCollection.md.txt

@@ -93,6 +93,7 @@ attributes:
     multivalued: true
     domain_of:
     - MappingRuleCollection
+    - RuleSet
     range: MappingRule
     inlined: true
   minimum_confidence:
@@ -125,6 +126,7 @@ attributes:
     owner: MappingRuleCollection
     domain_of:
     - MappingRuleCollection
+    - RuleSet
     range: MappingRule
     inlined: true
   minimum_confidence:

_sources/datamodels/mapping-rules/RegularExpressionString.md.txt

@@ -0,0 +1,34 @@
+# Type: RegularExpressionString
+
+
+
+URI: [xsd:string](http://www.w3.org/2001/XMLSchema#string)
+
+* [base](https://w3id.org/linkml/base): str
+
+* [uri](https://w3id.org/linkml/uri): xsd:string
+
+
+* [typeof](https://w3id.org/linkml/typeof): string
+
+
+
+
+
+
+
+## Identifier and Mapping Information
+
+
+
+
+
+
+
+### Schema Source
+
+
+* from schema: https://w3id.org/oak/mapping-rules-datamodel
+
+
+

_sources/datamodels/mapping-rules/RuleSet.md.txt

@@ -0,0 +1,142 @@
+# Class: RuleSet
+
+
+_A set of rules for generating synonyms or alternate lexical elements._
+
+
+
+
+
+URI: [mappingrules:RuleSet](https://w3id.org/oak/mapping-rules-datamodel/RuleSet)
+
+
+
+
+```{mermaid}
+ classDiagram
+    class RuleSet
+      RuleSet : prefix
+
+      RuleSet : rules
+
+          RuleSet --> Synonymizer : rules
+
+
+```
+
+
+
+
+<!-- no inheritance hierarchy -->
+
+
+## Slots
+
+| Name | Cardinality and Range | Description | Inheritance |
+| ---  | --- | --- | --- |
+| [rules](rules.md) | 0..* <br/> [Synonymizer](Synonymizer.md) | A list of rules for generating synonyms or alternate lexical elements | direct |
+| [prefix](prefix.md) | 0..1 <br/> [String](String.md) | The prefix that qualifies for the rule | direct |
+
+
+
+
+
+
+
+
+
+## Identifier and Mapping Information
+
+
+
+
+
+
+
+### Schema Source
+
+
+* from schema: https://w3id.org/oak/mapping-rules-datamodel
+
+
+
+
+
+## Mappings
+
+| Mapping Type | Mapped Value |
+| ---  | ---  |
+| self | mappingrules:RuleSet |
+| native | mappingrules:RuleSet |
+
+
+
+
+
+## LinkML Source
+
+<!-- TODO: investigate https://stackoverflow.com/questions/37606292/how-to-create-tabbed-code-blocks-in-mkdocs-or-sphinx -->
+
+### Direct
+
+<details>
+```yaml
+name: RuleSet
+description: A set of rules for generating synonyms or alternate lexical elements.
+from_schema: https://w3id.org/oak/mapping-rules-datamodel
+attributes:
+  rules:
+    name: rules
+    description: A list of rules for generating synonyms or alternate lexical elements.
+    from_schema: https://w3id.org/oak/synonymizer-datamodel
+    multivalued: true
+    domain_of:
+    - MappingRuleCollection
+    - RuleSet
+    range: Synonymizer
+  prefix:
+    name: prefix
+    description: The prefix that qualifies for the rule.
+    from_schema: https://w3id.org/oak/synonymizer-datamodel
+    domain_of:
+    - Synonymizer
+    - Test
+    - RuleSet
+    range: string
+
+```
+</details>
+
+### Induced
+
+<details>
+```yaml
+name: RuleSet
+description: A set of rules for generating synonyms or alternate lexical elements.
+from_schema: https://w3id.org/oak/mapping-rules-datamodel
+attributes:
+  rules:
+    name: rules
+    description: A list of rules for generating synonyms or alternate lexical elements.
+    from_schema: https://w3id.org/oak/synonymizer-datamodel
+    multivalued: true
+    alias: rules
+    owner: RuleSet
+    domain_of:
+    - MappingRuleCollection
+    - RuleSet
+    range: Synonymizer
+  prefix:
+    name: prefix
+    description: The prefix that qualifies for the rule.
+    from_schema: https://w3id.org/oak/synonymizer-datamodel
+    alias: prefix
+    owner: RuleSet
+    domain_of:
+    - Synonymizer
+    - Test
+    - RuleSet
+    range: string
+
+```
+</details>

_sources/datamodels/mapping-rules/Synonymizer.md.txt

@@ -10,6 +10,8 @@ URI: [mappingrules:Synonymizer](https://w3id.org/oak/mapping-rules-datamodel/Syn
 ```{mermaid}
  classDiagram
     class Synonymizer
+      Synonymizer : description
+
       Synonymizer : match
 
       Synonymizer : match_scope
@@ -24,8 +26,6 @@ URI: [mappingrules:Synonymizer](https://w3id.org/oak/mapping-rules-datamodel/Syn
 
           Synonymizer --> Test : tests
 
-      Synonymizer : the_rule
-
 
 ```
 
@@ -39,7 +39,7 @@ URI: [mappingrules:Synonymizer](https://w3id.org/oak/mapping-rules-datamodel/Syn
 
 | Name | Cardinality and Range | Description | Inheritance |
 | ---  | --- | --- | --- |
-| [the_rule](the_rule.md) | 0..1 <br/> [String](String.md) | Description of the rule | direct |
+| [description](description.md) | 0..1 <br/> [String](String.md) | Description of the rule | direct |
 | [match](match.md) | 0..1 <br/> [String](String.md) | Reg-ex rule to match substrings in labels | direct |
 | [match_scope](match_scope.md) | 0..1 <br/> [String](String.md) | Scope of the reg-ex rule | direct |
 | [replacement](replacement.md) | 0..1 <br/> [String](String.md) | Reg-ex rule to replace substrings in labels | direct |
@@ -56,6 +56,7 @@ URI: [mappingrules:Synonymizer](https://w3id.org/oak/mapping-rules-datamodel/Syn
 | used by | used in | type | used |
 | ---  | --- | --- | --- |
 | [MappingRule](MappingRule.md) | [synonymizer](synonymizer.md) | range | [Synonymizer](Synonymizer.md) |
+| [RuleSet](RuleSet.md) | [rules](rules.md) | range | [Synonymizer](Synonymizer.md) |
 
 
 
@@ -101,12 +102,12 @@ URI: [mappingrules:Synonymizer](https://w3id.org/oak/mapping-rules-datamodel/Syn
 name: Synonymizer
 from_schema: https://w3id.org/oak/mapping-rules-datamodel
 attributes:
-  the_rule:
-    name: the_rule
+  description:
+    name: description
     description: Description of the rule.
     from_schema: https://w3id.org/oak/mapping-rules-datamodel
-    rank: 1000
     domain_of:
+    - MappingRule
     - Synonymizer
     range: string
   match:
@@ -149,6 +150,7 @@ attributes:
     domain_of:
     - Synonymizer
     - Test
+    - RuleSet
     range: string
   tests:
     name: tests
@@ -169,14 +171,14 @@ attributes:
 name: Synonymizer
 from_schema: https://w3id.org/oak/mapping-rules-datamodel
 attributes:
-  the_rule:
-    name: the_rule
+  description:
+    name: description
     description: Description of the rule.
     from_schema: https://w3id.org/oak/mapping-rules-datamodel
-    rank: 1000
-    alias: the_rule
+    alias: description
     owner: Synonymizer
     domain_of:
+    - MappingRule
     - Synonymizer
     range: string
   match:
@@ -229,6 +231,7 @@ attributes:
     domain_of:
     - Synonymizer
     - Test
+    - RuleSet
     range: string
   tests:
     name: tests

_sources/datamodels/mapping-rules/Test.md.txt

@@ -108,6 +108,7 @@ attributes:
     domain_of:
     - Synonymizer
     - Test
+    - RuleSet
 
 ```
 </details>
@@ -148,6 +149,7 @@ attributes:
     domain_of:
     - Synonymizer
     - Test
+    - RuleSet
     range: string
 
 ```

_sources/datamodels/mapping-rules/description.md.txt

@@ -14,6 +14,7 @@ URI: [mappingrules:description](https://w3id.org/oak/mapping-rules-datamodel/des
 | Name | Description | Modifies Slot |
 | --- | --- | --- |
 [MappingRule](MappingRule.md) | An individual mapping rule, if preconditions match the postconditions are app... |  no  |
+[Synonymizer](Synonymizer.md) |  |  no  |
 
 
 
@@ -37,25 +38,16 @@ URI: [mappingrules:description](https://w3id.org/oak/mapping-rules-datamodel/des
 
 
 
-### Schema Source
-
-
-* from schema: https://w3id.org/oak/mapping-rules-datamodel
-
-
-
 
 ## LinkML Source
 
 <details>
 ```yaml
 name: description
-from_schema: https://w3id.org/oak/mapping-rules-datamodel
-rank: 1000
 alias: description
-owner: MappingRule
 domain_of:
 - MappingRule
+- Synonymizer
 range: string
 
 ```

_sources/datamodels/mapping-rules/index.md.txt

@@ -1,6 +1,6 @@
 # Mapping Rules Datamodel
 
-A datamodel for specifying lexical mapping rules.
+A datamodel for specifying lexical mapping rules
 
 URI: https://w3id.org/oak/mapping-rules-datamodel
 
@@ -23,6 +23,7 @@ Name: mapping-rules-datamodel
 | [Postcondition](Postcondition.md) | None |
 | [Precondition](Precondition.md) | A pattern to be matched against an individual SSSOM mapping |
 | [RelationshipToTerm](RelationshipToTerm.md) | A relationship of an ontology element to a lexical term |
+| [RuleSet](RuleSet.md) | A set of rules for generating synonyms or alternate lexical elements. |
 | [Synonymizer](Synonymizer.md) | None |
 | [Test](Test.md) | None |
 
@@ -66,7 +67,6 @@ Name: mapping-rules-datamodel
 | [synonymizer](synonymizer.md) | Normalizing rules to labels |
 | [term](term.md) | A normalized term that groups ontology elements |
 | [tests](tests.md) | Unit tests for each rules |
-| [the_rule](the_rule.md) | Description of the rule |
 | [transformations](transformations.md) |  |
 | [transformations_included_in](transformations_included_in.md) |  |
 | [type](type.md) | The type of transformation |
@@ -98,6 +98,7 @@ Name: mapping-rules-datamodel
 | [Ncname](Ncname.md) | Prefix part of CURIE |
 | [Nodeidentifier](Nodeidentifier.md) | A URI, CURIE or BNODE that represents a node in a model |
 | [Objectidentifier](Objectidentifier.md) | A URI or CURIE that represents an object in the model |
+| [RegularExpressionString](RegularExpressionString.md) |  |
 | [Sparqlpath](Sparqlpath.md) | A string encoding a SPARQL Property Path |
 | [String](String.md) | A character string |
 | [Time](Time.md) | A time object represents a (local) time of day, independent of any particular... |

_sources/datamodels/mapping-rules/mapping-rules-datamodel.md.txt

@@ -1,6 +1,6 @@
 # mapping-rules-datamodel
 
-A datamodel for specifying lexical mapping rules.
+A datamodel for specifying lexical mapping rules
 
 URI: https://w3id.org/oak/mapping-rules-datamodel