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_modules/oaklib/implementations/pantherdb/pantherdb_implementation.html
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# Slot: direction | ||
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_The direction of the enrichment_ | ||
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URI: [ontoenrich:direction](https://w3id.org/oak/class-enrichment/direction) | ||
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<!-- no inheritance hierarchy --> | ||
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## Applicable Classes | ||
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| Name | Description | Modifies Slot | | ||
| --- | --- | --- | | ||
[ClassEnrichmentResult](ClassEnrichmentResult.md) | A single enrichment result | no | | ||
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## Properties | ||
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* Range: [Integer](Integer.md) | ||
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## Identifier and Mapping Information | ||
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### Schema Source | ||
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* from schema: https://w3id.org/oak/class-enrichment | ||
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## LinkML Source | ||
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<details> | ||
```yaml | ||
name: direction | ||
description: The direction of the enrichment | ||
from_schema: https://w3id.org/oak/class-enrichment | ||
rank: 1000 | ||
alias: direction | ||
owner: ClassEnrichmentResult | ||
domain_of: | ||
- ClassEnrichmentResult | ||
range: integer | ||
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``` | ||
</details> |
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.. _pantherdb_implementation: | ||
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PantherDB Adapter | ||
============= | ||
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Command Line Examples | ||
---------------------- | ||
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Use the :code:`pantherdb` selector, with an optional NCBI Taxon local ID. | ||
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Annotation | ||
^^^^^^^^^^ | ||
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.. code:: shell | ||
runoak -i pantherdb:9606 associations -Q subject UniProtKB:P04217 --no-autolabel | ||
Enrichment | ||
^^^^^^^^^^ | ||
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.. code:: shell | ||
runoak -i pantherdb:9606 enrichment -U my-gene-ids.txt | ||
Mapping | ||
^^^^^^^^^^ | ||
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.. code:: shell | ||
runoak -i pantherdb:9606 mappings UniProtKB:P04217 | ||
Code | ||
---- | ||
.. currentmodule:: oaklib.implementations.pantherdb.pantherdb_implementation | ||
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.. autoclass:: PantherDBImplementation |
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# Slot: direction | ||
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_The direction of the enrichment_ | ||
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URI: [ontoenrich:direction](https://w3id.org/oak/class-enrichment/direction) | ||
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<!-- no inheritance hierarchy --> | ||
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## Applicable Classes | ||
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| Name | Description | Modifies Slot | | ||
| --- | --- | --- | | ||
[ClassEnrichmentResult](ClassEnrichmentResult.md) | A single enrichment result | no | | ||
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## Properties | ||
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* Range: [Integer](Integer.md) | ||
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## Identifier and Mapping Information | ||
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### Schema Source | ||
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* from schema: https://w3id.org/oak/class-enrichment | ||
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## LinkML Source | ||
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<details> | ||
```yaml | ||
name: direction | ||
description: The direction of the enrichment | ||
from_schema: https://w3id.org/oak/class-enrichment | ||
rank: 1000 | ||
alias: direction | ||
owner: ClassEnrichmentResult | ||
domain_of: | ||
- ClassEnrichmentResult | ||
range: integer | ||
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``` | ||
</details> |
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